Clone FMO02972 Report

Search the DGRC for FMO02972

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:29
Well:72
Vector:pMK33-CFH-BD
Associated Gene/Transcriptdpr11-RB
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO02972.5prime Sequence

1236 bp (259 high quality bases) assembled on 2008-07-02

> FMO02972.5prime
GTATAGCATACATAATACGAAGTTATCAGTCGACATGCGCTCCTGGAAAA
ATCGCAGTCAATCCGAAATGCAAACACTCGAAACGAGAGTGCGGCCCCTG
CAGGGCGCTCAGCTAACTCAGCTGCTCCTCGGTGGCATCCTCTGCCTCAC
AATCGCATCGCACACACAGACGTCGGCGGAGGCGGCAGGCGGTCGGGTAT
CTGGACCCGGAGCAGGAACATCACAAGGAGCAGGAACCTCATCGGCATCG
GCAGCCTCCACGGCCATCAGCTCCGATGAGAGCGGCGACCCATCATCGGC
GACCGCGTTCTCCAGTTTGGCTCAAGTGTCCTCGCTTCTGCCGGAGGCAT
CCGCTCTGTCGGCGACATCGGGACTCGTGGAGCCCTATCTGGATGGCTAC
GCCACTTCCAATGTGACCACTCAGATCGGGACACACGCGTATCTGCCCTG
TCAGGTCAAACAGCTGGGCAACAAATCTGTGTCCTGGATTCATCTGCGAG
ATGGGCACATCTTGACCGTTGACAGGGCCGTCTTCATAGCCGACCAGCGA
TTCCTGACCATCAAGCAACCGGACAAGTACTGGACCCTGCAGATTAAGTA
CGTCCAGGCCCGGGACGCCGGCTCCTACGAGTGCCAGGTCTCTACAGAGC
CCAAAGTCAGCGCACGTGTCCAGCTGCAAGTTGTGGTTCCTCGCACGGAG
ATCCTAGGAGAGCCGGACCGCTACGTGAAAGCAGGCAGCAACGTGGTGCT
CCGCTGTATCATGCGCGGAGCCTTGGAGCCGCCCACGTTCATCATGTGGT
ACCACTGCGCCGAGCAGCTGGCAGCCGACTCCCGGCGCCACCGCACGCAA
CTGTATCCCAATTCTGCCGGAGCCTCCGGCGAACGAAAGAGCACGATTGG
CTCATTATCATCGAGTCGTCAAGAAGCGCGATACAGTCATTACACATGTA
GCCCGTCGATAGCTCTAGTGCGACCGTACGCTGAACATAATAAATGCGAT
CGTCGGCCTCGGCGTACATCTCGCAGCACCACCGGACCTACTCCTTCAGC
ATCTGAGCTTCTGCTACAGTCGTCCTCATCGATGGGACCACCGACGAGCA
AGCATTTCTGAATCATCGTTGGGGCCTGTCCAGGTTAGTGTCATAATACA
TATCCTATCTAACCTAAGTCGACTTAGCCTAGAATCTGGGCTGAGACAAT
TGAGTCTGAACTCTCCACAGCATTACACAATGATGT

FMO02972.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:40:01
Subject Length Description Subject Range Query Range Score Percent Strand
dpr11-RC 4651 CG33202-RC 1070..2132 35..1081 4435 95.6 Plus
dpr11-RB 3519 CG33202-RB 1070..2132 35..1081 4435 95.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:39:59
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 6545673..6545974 456..155 1480 99.3 Minus
3R 32079331 3R 6532636..6532845 895..686 820 94.8 Minus
3R 32079331 3R 6538307..6538470 686..523 760 97.6 Minus
3R 32079331 3R 6566135..6566255 155..35 590 99.2 Minus
3R 32079331 3R 6542570..6542644 526..452 360 98.7 Minus
3R 32079331 3R 6531946..6532052 996..895 225 91.6 Minus
Blast to na_te.dros performed on 2014-11-28 19:39:59 has no hits.

FMO02972.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.5.fasta performed 2010-07-30 09:26:46 Download gff for FMO02972.5prime
Subject Subject Range Query Range Percent Splice Strand
dpr11-RB 1065..2080 28..1033 96   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:45:56 Download gff for FMO02972.5prime
Subject Subject Range Query Range Percent Splice Strand
dpr11-RB 1065..2080 28..1033 96   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:25:48 Download gff for FMO02972.5prime
Subject Subject Range Query Range Percent Splice Strand
dpr11-RB 1065..2080 28..1033 96   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:25:48 Download gff for FMO02972.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 6531946..6532051 896..996 91 <- Minus
3R 6532636..6532844 687..895 94 <- Minus
3R 6538307..6538467 526..686 97 <- Minus
3R 6542571..6542641 455..525 98 <- Minus
3R 6545675..6545973 156..454 99 <- Minus
3R 6566135..6566260 28..155 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:45:56 Download gff for FMO02972.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 2357668..2357773 896..996 91 <- Minus
arm_3R 2358358..2358566 687..895 94 <- Minus
arm_3R 2364029..2364189 526..686 97 <- Minus
arm_3R 2368293..2368363 455..525 98 <- Minus
arm_3R 2371397..2371695 156..454 99 <- Minus
arm_3R 2391857..2391982 28..155 96   Minus