FMO02972.5prime Sequence
1236 bp (259 high quality bases) assembled on 2008-07-02
> FMO02972.5prime
GTATAGCATACATAATACGAAGTTATCAGTCGACATGCGCTCCTGGAAAA
ATCGCAGTCAATCCGAAATGCAAACACTCGAAACGAGAGTGCGGCCCCTG
CAGGGCGCTCAGCTAACTCAGCTGCTCCTCGGTGGCATCCTCTGCCTCAC
AATCGCATCGCACACACAGACGTCGGCGGAGGCGGCAGGCGGTCGGGTAT
CTGGACCCGGAGCAGGAACATCACAAGGAGCAGGAACCTCATCGGCATCG
GCAGCCTCCACGGCCATCAGCTCCGATGAGAGCGGCGACCCATCATCGGC
GACCGCGTTCTCCAGTTTGGCTCAAGTGTCCTCGCTTCTGCCGGAGGCAT
CCGCTCTGTCGGCGACATCGGGACTCGTGGAGCCCTATCTGGATGGCTAC
GCCACTTCCAATGTGACCACTCAGATCGGGACACACGCGTATCTGCCCTG
TCAGGTCAAACAGCTGGGCAACAAATCTGTGTCCTGGATTCATCTGCGAG
ATGGGCACATCTTGACCGTTGACAGGGCCGTCTTCATAGCCGACCAGCGA
TTCCTGACCATCAAGCAACCGGACAAGTACTGGACCCTGCAGATTAAGTA
CGTCCAGGCCCGGGACGCCGGCTCCTACGAGTGCCAGGTCTCTACAGAGC
CCAAAGTCAGCGCACGTGTCCAGCTGCAAGTTGTGGTTCCTCGCACGGAG
ATCCTAGGAGAGCCGGACCGCTACGTGAAAGCAGGCAGCAACGTGGTGCT
CCGCTGTATCATGCGCGGAGCCTTGGAGCCGCCCACGTTCATCATGTGGT
ACCACTGCGCCGAGCAGCTGGCAGCCGACTCCCGGCGCCACCGCACGCAA
CTGTATCCCAATTCTGCCGGAGCCTCCGGCGAACGAAAGAGCACGATTGG
CTCATTATCATCGAGTCGTCAAGAAGCGCGATACAGTCATTACACATGTA
GCCCGTCGATAGCTCTAGTGCGACCGTACGCTGAACATAATAAATGCGAT
CGTCGGCCTCGGCGTACATCTCGCAGCACCACCGGACCTACTCCTTCAGC
ATCTGAGCTTCTGCTACAGTCGTCCTCATCGATGGGACCACCGACGAGCA
AGCATTTCTGAATCATCGTTGGGGCCTGTCCAGGTTAGTGTCATAATACA
TATCCTATCTAACCTAAGTCGACTTAGCCTAGAATCTGGGCTGAGACAAT
TGAGTCTGAACTCTCCACAGCATTACACAATGATGT
FMO02972.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:40:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dpr11-RC | 4651 | CG33202-RC | 1070..2132 | 35..1081 | 4435 | 95.6 | Plus |
dpr11-RB | 3519 | CG33202-RB | 1070..2132 | 35..1081 | 4435 | 95.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:39:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 6545673..6545974 | 456..155 | 1480 | 99.3 | Minus |
3R | 32079331 | 3R | 6532636..6532845 | 895..686 | 820 | 94.8 | Minus |
3R | 32079331 | 3R | 6538307..6538470 | 686..523 | 760 | 97.6 | Minus |
3R | 32079331 | 3R | 6566135..6566255 | 155..35 | 590 | 99.2 | Minus |
3R | 32079331 | 3R | 6542570..6542644 | 526..452 | 360 | 98.7 | Minus |
3R | 32079331 | 3R | 6531946..6532052 | 996..895 | 225 | 91.6 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:39:59 has no hits.
FMO02972.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2010-07-30 09:26:46 Download gff for
FMO02972.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dpr11-RB | 1065..2080 | 28..1033 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:45:56 Download gff for
FMO02972.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dpr11-RB | 1065..2080 | 28..1033 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:25:48 Download gff for
FMO02972.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dpr11-RB | 1065..2080 | 28..1033 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:25:48 Download gff for
FMO02972.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 6531946..6532051 | 896..996 | 91 | <- | Minus |
3R | 6532636..6532844 | 687..895 | 94 | <- | Minus |
3R | 6538307..6538467 | 526..686 | 97 | <- | Minus |
3R | 6542571..6542641 | 455..525 | 98 | <- | Minus |
3R | 6545675..6545973 | 156..454 | 99 | <- | Minus |
3R | 6566135..6566260 | 28..155 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:45:56 Download gff for
FMO02972.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 2357668..2357773 | 896..996 | 91 | <- | Minus |
arm_3R | 2358358..2358566 | 687..895 | 94 | <- | Minus |
arm_3R | 2364029..2364189 | 526..686 | 97 | <- | Minus |
arm_3R | 2368293..2368363 | 455..525 | 98 | <- | Minus |
arm_3R | 2371397..2371695 | 156..454 | 99 | <- | Minus |
arm_3R | 2391857..2391982 | 28..155 | 96 | | Minus |