FMO02975.5prime Sequence
1234 bp (422 high quality bases) assembled on 2008-07-02
> FMO02975.5prime
CGTATAGCATACCTTATACCAAGTTATCAATCCACATGTGCCACAATTCA
GGGATCGTGGAGAAAAACAACGAGCAGCAGATCTAGCGCTACATGGCCTG
TGGGATGCCATCGAAGGCGGTGAAGAGTGTCAAGTACACGCTGAAGAAGC
GCGAGAAGAAGGAGCAGCAGCGGAGAGATCTGGAAAAGGATCTGCACAGG
GAACAGCAGTTCCTTGAGGAACTCGAGCTAAGCAGTAGCGCCAGCGACTC
CTCCTCCTCCTCCTCGTCCTCCTCGGTCACCGGCAGCGATAGCGAGGATA
GCGGCGTTACCGAAACCGTTTTGAAATCGTCGCCGTCGGCGGATATGACA
ACCAGTCCAAAGGTCATCTCACCGGCCCCCACACCCAGAAGCGACCTCTT
ACGATTCTGCCCGCGATTTCGCAAGCTGCAGCAGGAGCAGCAGCGACAGA
TGCTCAAGGAGATGGAGTTGCGGGAGGAGGAGCCCTTGGCCACCAGCACG
CCCGCCGCCGCCCTGAAGGCTCAACAGCAGCGCAAGCTGATCTCCATGGA
GCCGTCAATGGACAACGCCCTGGCCATCGGCACCCAGATGACTAGGCAGG
TGTCCGAGCGAATCACCTGCCTGGTGGCCAAGCTGCAGGCCAGTCGCCTG
TACACAATTCTGACGCGTACGACACAGCCAGCACACTTGATAGCTGTTTG
CATCTTGGCCTTTGTGCTGATGACTGTGGGACGCGACCTCATCGACCCAA
CGACAACGGTGGCAACAGCAGAAGCAGCAGCGTCTGCAACATCATCATCG
ACGAGAACAGCAACGGGCGGAGTTATGGCGGCCTTGTCTTCCTGGGAGCC
TTTGCCACCCACTTTGGGTCTCAATCTGGATGACATTTGTCCTCGGGACT
CTCGCTGTATTTCTCTTCTGCCCCGCCCCGTTTTCCGGGCAGAGCCAGCA
AATCTTCTACTCGCGCTACTTCTCCCCGAACGCCATGCTCAACCTGACCA
ATGCTGGAGAGTATGCCAAGTATTTCCTCATCGAAAGGATCAACTCGACG
GTAATCAAATTGAATCCCTGACCTGGCCGCGGGAAATGAGGAGGTGGATG
GCCCAGACCAGGGGAACCCAGTCCTGCACTGATGTCCAAAATTCCCGGAT
TCACGATGGAAACGGCTGCTCAAGGTGGACATCCTGGCCAGGCGACACTG
CATATGGTCGCCGCGCGATACTAACAGCACCCAC
FMO02975.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:14:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32512-RD | 2322 | CG32512-RD | 322..1384 | 36..1097 | 4510 | 95.5 | Plus |
| CG32512-RA | 2215 | CG32512-RA | 322..1384 | 36..1097 | 4510 | 95.5 | Plus |
| CG32512-RC | 1412 | CG32512-RC | 136..581 | 653..1097 | 1515 | 90.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:14:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 21066600..21067219 | 655..36 | 3010 | 99 | Minus |
| X | 23542271 | X | 21063806..21064043 | 891..656 | 1045 | 97.9 | Minus |
| X | 23542271 | X | 21063284..21063416 | 1030..896 | 290 | 84.4 | Minus |
Blast to na_te.dros performed 2014-11-28 20:14:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| roo | 9092 | roo DM_ROO 9092bp | 1076..1144 | 754..822 | 147 | 68.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2305..2360 | 761..816 | 127 | 69.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2451..2514 | 748..814 | 112 | 65.7 | Plus |
FMO02975.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-02 17:02:16 Download gff for
FMO02975.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32512-RA | 294..1310 | 28..1044 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:41:54 Download gff for
FMO02975.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32512-RA | 312..1328 | 28..1044 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:58:59 Download gff for
FMO02975.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32512-RA | 312..1328 | 28..1044 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:58:59 Download gff for
FMO02975.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 21063802..21064043 | 656..896 | 97 | <- | Minus |
| X | 21066600..21067224 | 28..655 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:41:54 Download gff for
FMO02975.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 20934829..20935070 | 656..896 | 97 | <- | Minus |
| arm_X | 20937627..20938251 | 28..655 | 98 | | Minus |
