FMO02978.5prime Sequence
1081 bp (1064 high quality bases) assembled on 2008-07-02
> FMO02978.5prime
CGTATAGCATACATAATACGAAGTTATCAGTCGACATGGTTTCTACTTTC
ATTGGATTATTAGACATTCAATCATGGTGGGAGATACCGTGTATTTCGCA
TTTCTGTTCATTGTTTAGTTCTGCCTTTGATCTGCCCGACATCGACATCG
AGGACCTCGAATCGGCGCTGCTCTCCGATGGTACCAGCGATGAGGATCAG
GTCGCCCTAGTGCCCGAGTTAATTGTGCGCCTGCTCAAGGGCTGCGATGC
GCTACAGACGGTAGCCAAGGAAATCACACACAGCAACTATCAGATGTTCT
TGCGTCGCTTCCTGCGCCAACAGTGTCGCCTGCACCAGACCGAGAACCAC
TTCGACACGGACATTGACTTCCAGTCGCTGCCCGTGCGCAAGCGCCTGCA
CATTCTGCACGATCTGTGCCACTTTCGCCTGGACTCCGTCGATGTGCAGG
TCATCCTCAGCAATCTAGAGGCGGATAGTCTGCGCGTGGAGCCTCTGGGC
TACGACGCCAAGAATTCCGGCTACTGGTACTTCTACGGCACGCGACTATA
TCGGGAGGACAAAGCCACCGGTGGATCGGCCTCCTCCAGTTCGGGTTCGG
GATCAGGTGGCGCTGGAGCCTCAACTGGCGGAGCATCCAACAGCAAGGGC
ATCGGCAGCAACGGTACAGTTTGGCAAGTCATCTGCTTCACCGAAGAGGA
CTGGCAAAACTTGGCCGCCAAGTTTAAGACCTCGACGAACGCCAAGGAGC
GCGAACTCTTTAACATACTCGATGACAACTTTCTGCCCAAGCTGCCGCAG
CTTTTCCGCGAACGTGAGCGTTTGAGGCGTAGAAACTTTTGCAAGTGCGC
AACTCCAGCCGCATTCGCAACATCGCGGAGTTGAAGGCACGCCAGGAGGA
GGAGCGCCAGCGTCGTGAGCGGGAGAATCTCTACCAGGATCGGCAAAACG
CACACTGGTTGGCACCGCGCAGCAGCAGCAACACAGCAGCAACAGCAGCA
GCAACAACAGCAGCAATCGCAGCAGCGCAACGCAGACGGTAGCACGCCAT
GTTCCGCAAGCTTTCTAGACCATCGGTTGGC
FMO02978.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:13:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dikar-RE | 3009 | CG42799-RE | 247..1272 | 36..1055 | 4980 | 99.4 | Plus |
| dikar-RB | 1578 | CG42799-RB | 210..1235 | 36..1055 | 4980 | 99.4 | Plus |
| dikar-RG | 11160 | CG42799-RG | 247..1253 | 36..1038 | 4935 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:13:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 6740960..6741641 | 832..151 | 3410 | 100 | Minus |
| 3L | 28110227 | 3L | 6740665..6740873 | 1040..835 | 895 | 98.6 | Minus |
| 3L | 28110227 | 3L | 6741701..6741792 | 153..62 | 460 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:13:17 has no hits.
FMO02978.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-02 17:01:27 Download gff for
FMO02978.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dikar-RB | 205..1235 | 28..1055 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:59:39 Download gff for
FMO02978.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dikar-RB | 205..1235 | 28..1055 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:45:19 Download gff for
FMO02978.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dikar-RB | 205..1235 | 28..1055 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:45:19 Download gff for
FMO02978.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 6740648..6740873 | 835..1055 | 97 | <- | Minus |
| 3L | 6740957..6741639 | 153..834 | 99 | <- | Minus |
| 3L | 6741702..6741790 | 64..152 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:59:39 Download gff for
FMO02978.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 6733748..6733973 | 835..1055 | 97 | <- | Minus |
| arm_3L | 6734057..6734739 | 153..834 | 99 | <- | Minus |
| arm_3L | 6734802..6734890 | 64..152 | 100 | <- | Minus |
