FMO02979.5prime Sequence
1176 bp (526 high quality bases) assembled on 2008-07-02
> FMO02979.5prime
ATACCTTTTACGAAGTTATCAGTCCACATGTCCAAAGAAAAGGAGGACGA
GTGCTACAAGCACAAACAGCAGGCGACGGCGGACGCCAAGTCCACGTCGA
GCGAGGATTCCGATGAGTACCATTCGGCCGGTGAGGGCGAGGATGGAGAC
GGCGATGGTGACGGTGATTCCCCAGCGGAGCGCCCGCCTGACAAAACCAG
CCCCACGGTCGCCGTTGCGCCCACAGCAAAGGCAGCATCGCCACTGCCCA
CTGTGAAGCCAGCATCCGAGGCCCTGGACTTTCCTATGCACCGGAGTGTT
TTCGAGGACGACATCAAGTCGCTGCAGCGACGACTTCTATTGAGCACGGC
CCAAGACGAAGTGGGTAGAAAGGATAATCACGGCAATACGCCACTCCATC
TGGCCGTAATGCTGGGCAAAAAGCACGCTGTCCGTTTGCTTCTGGCCCAA
AACGCCCCCGTAAATATCAAGAACAATGAGGGCTGGTCCCCGCTGTCCGA
GGCCATTAGCTACGGCGACCGCCAGACAATCACCCTGTGCTGCGAATGCT
AAAGCTGCTCTCCCGCGAACACATGGATAGTCGGCGCGAGAAGCTGGTCA
ATGCGCTGCGCCAGATGCAGGACTTCTACATGGAATTCAAGTGGGATTTT
CAATCATGGCTGCCACTGGTTTTCCCGCATCCTGCCCTCGGACATCTGCC
GGATTTACAAGTCGGGCGCCTCCTTTCGTTTGGGAACCACACTGGTGGAC
TTCAATGATATGCGTTGGGAGCGAGGGGACATATCGTTCTTGTTTAGAGG
TGAGGCGCCAGGCAAGGGAATCGCTGGTTCTGTTGGACAATGAAGCAGAT
TGCTTTCATCGGCTGCATTACAGGAATCAAACTTGGAGGAATAAGTGGAT
GTGTTCTGTCACTGATATCCTGGCCACCCAATTGTCCACCAGACTAATTC
ATTCGCCCATGCGCACGCGGATGGAATATCCGCGCCCATTCGCAGGGAGC
TCCATTGGGGGGCAATACTCATGTCCGATATTTACATCCATTCCCTGGGC
TTTTATCTCTGAAACATCGTAGAAGGCGGGAACCACTGTATTCAACAAAG
ATACTAAAAAAAACCGGCCATTGTTCAGTACTAATTCCATGGGTGTCCAC
GCCTGACCACCTGGAATACTACGTTC
FMO02979.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:14:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5742-RC | 2947 | CG5742-RC | 102..1154 | 26..1083 | 4140 | 93.9 | Plus |
| CG5742-RB | 3060 | CG5742-RB | 102..1154 | 26..1083 | 4140 | 93.9 | Plus |
| CG5742-RA | 2947 | CG5742-RA | 102..1154 | 26..1083 | 4140 | 93.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:14:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18150392..18151309 | 941..26 | 3835 | 96 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:14:40 has no hits.
FMO02979.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-02 17:02:18 Download gff for
FMO02979.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5742-RA | 77..918 | 21..866 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:41:59 Download gff for
FMO02979.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5742-RA | 100..941 | 21..866 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:59:07 Download gff for
FMO02979.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5742-RA | 100..941 | 21..866 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:59:07 Download gff for
FMO02979.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18150470..18151311 | 21..866 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:41:59 Download gff for
FMO02979.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14037975..14038816 | 21..866 | 97 | | Minus |
