FMO02980.5prime Sequence
705 bp (705 high quality bases) assembled on 2008-07-02
> FMO02980.5prime
TCGTATAGCATACATAATACGAAGTTATCAGTCGACATGGGACAGGTTGT
GGAGGCCGATATCCTCGGTGACGAGTGGAAGGGCTACCAGCTGCGCATCG
CCGGCGGCAACGACAAGCAGGGATTCCCCATGAAGCAGGGTGTCTTGACC
CACGGCCGTGTGCGTCTGCTCCTGAAGAAGGGACACTCCTGCTACCGTCC
ACGCCGCACTGGCGAGCGTAAGCGCAAGTCTGTGCGTGGATGCATCGTGG
ACGCCAACATGTCTGTGCTGGCTCTGGTCGTCTTGAAGAAGGGTGAGAAG
GACATTCCCGGTCTCACCGACACCACCATCCCACGTCGCCTGGGACCCAA
GCGTGCTAGCAAGATCCGCAAGCTCTACAACTTGAGCAAGGAAGATGATG
TGCGTCGCTTCGTTGTGCGTCGCCCTTTGCCCGCCAAGGACAACAAGAAG
GCCACCTCCAAGGCCCCCAAAATTCAGCGCCTGATCACCCCCGTAGTGCT
GCAGCGCAAGCACCGTCGCATTGCGCTGAAGAAGAAGCGCCAGATCGCTT
CCAAGGAGGCTTCCGCCGACTACGCCAAGCTGTTGGTGCAGCGCAAGAAG
GAGTCCAAGGCCAAGCGCGAGGAGGCCAAGCGCCGCCGTTCTGCCTCCAT
TCGCGAGTCCAAGAGCTCTGTCTCCAGCGACAAGAAGGCAAGCTTTCTAG
ACCAT
FMO02980.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:09:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpS6-RA | 1195 | CG10944-RA | 412..1062 | 37..687 | 3240 | 99.8 | Plus |
| RpS6-RB | 960 | CG10944-RB | 177..827 | 37..687 | 3240 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:09:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 7899757..7900290 | 687..154 | 2655 | 99.8 | Minus |
| X | 23542271 | X | 7900802..7900920 | 155..37 | 595 | 100 | Minus |
| X | 23542271 | X | 7898591..7898680 | 619..530 | 270 | 86.7 | Minus |
| X | 23542271 | X | 7897401..7897490 | 619..530 | 270 | 86.7 | Minus |
| X | 23542271 | X | 7897603..7897725 | 291..169 | 195 | 77.2 | Minus |
| X | 23542271 | X | 7898793..7898915 | 291..169 | 195 | 77.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:09:25 has no hits.
FMO02980.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-02 17:01:19 Download gff for
FMO02980.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpS6-RC | 98..756 | 30..691 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:04:30 Download gff for
FMO02980.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpS6-RB | 172..830 | 30..691 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:39:48 Download gff for
FMO02980.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpS6-RB | 172..830 | 30..691 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:39:48 Download gff for
FMO02980.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 7899753..7900289 | 155..691 | 99 | <- | Minus |
| X | 7900803..7900925 | 30..154 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:04:30 Download gff for
FMO02980.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 7793786..7794322 | 155..691 | 99 | <- | Minus |
| arm_X | 7794836..7794958 | 30..154 | 97 | | Minus |
