FMO02982.5prime Sequence
1231 bp (1034 high quality bases) assembled on 2008-07-02
> FMO02982.5prime
TAGCATACATTATACGAAGTTATCAGTCGACATGAGCGTTTCGATGTCAC
TGGTACAGGGTGGTGCTGCCGGTGGTGCGCCACAGGGCGCCAGCGCAATC
TTGGCCGCAGCGGCTCCCTACTATCAACCGCCGGCTGTTCCCCAGGATGT
TCAGCCGGATCGTCCTATCGGCTATGGAGCATTCGGAGTTGTCTGGGCCG
TCACAGATCCTCGCGATGGACGACGAGTGGCATTGAAGAAGCTGCCAAAT
GTGTTCCAATCGTTGGTCTCATCGAAGCGCGTTTTTCGCGAGCTGAAAAT
GCTGTGCTTCTTCAAGCATGAAAATGTTCTTTCAGCTCTGGACATTCTAC
AGCCACCGCATTTGGATTTCTTTCAAGAAATCTATGTGATAACGGAGCTG
CTGCAATCGGATCTGCACAAGATAATCGTGTCGCCACAGCACCTGTCCGC
CGACCACATCAAGGTGTTCCTGTACCAGATCCTGCGCGGCCTCAAATATC
TGCACTCGGCCCGCATCCTGCATCGCGACATCAAGCCGGGCAATCTGCTG
GTCAACTCGAATTGCGTGCTCAAGATCTGTGACTTTGGATTGGCCCGCGT
CGAGGAGCCGGATCAGGCCAAGCACATGACCCAAGAGGTGGTCACCCAGT
ACTATCGCGCACCGGAGATTCTGATGGGCGCTCGCCACTACTCGTCGGCG
GTGGATGTATGGTCGGTGGGCTGCATTTTTGGCGAGCTGCTGGGCCGTCG
CATCCTCTTCCAGGCACAGAATCCTGTGCAGCAGCTGGAGCTGATTACCG
AGCTGCTTGGCACGCCCACCATGGAGGATATGCGTCACGCCTGCGAGGGC
GCCCGCACCCACATGTTGCGCCGGGCGCCCAAGCCGCCATCCTTCTCGGT
GCTCTACACACTCAGCTCGCATGCAACGCACGAAGGCGGTGCACTTGCTC
TGCCAGATGCCTCGTCTTCGAATCCGGATAAGCGCATCTCCGTGACAGAT
GCCCTGACGCATCCGTATCTGGAATGAGGGGCGTCTGGCCCTATCACTCG
TGCATGTGCCAAATGCTGCTTTCCATACCTCAGGCCGGAATGCCGTTCAG
GATACGGCTGATTTGAGCCCTCTCGCCGGGCCAGCCTCCGATGATCTGTG
GGAAACGTAGCTCTGACTCGTCACAGTCAAAAGGGAGTGACAAGTCCATG
CCGAAACAGCGTCACAGACGGGGTCAGAGTA
FMO02982.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:37:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| nmo-RH | 6235 | CG7892-RH | 719..1831 | 32..1154 | 5170 | 98.1 | Plus |
| nmo-RG | 2250 | CG7892-RG | 548..1660 | 32..1154 | 5170 | 98.1 | Plus |
| nmo-RF | 2757 | CG7892-RF | 1055..2167 | 32..1154 | 5170 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:37:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8046570..8047157 | 382..971 | 2835 | 99.5 | Plus |
| 3L | 28110227 | 3L | 7980819..7980983 | 32..196 | 825 | 100 | Plus |
| 3L | 28110227 | 3L | 8039874..8040006 | 195..327 | 665 | 100 | Plus |
| 3L | 28110227 | 3L | 8047245..8047416 | 976..1154 | 320 | 88.9 | Plus |
| 3L | 28110227 | 3L | 8045891..8045950 | 326..385 | 285 | 98.3 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:37:27 has no hits.
FMO02982.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2010-07-30 09:26:56 Download gff for
FMO02982.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nmo-RA | 711..1839 | 24..1167 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:44:15 Download gff for
FMO02982.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nmo-RF | 1050..2178 | 24..1167 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:24:27 Download gff for
FMO02982.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nmo-RF | 1050..2178 | 24..1167 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:24:27 Download gff for
FMO02982.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 7980814..7980982 | 24..195 | 98 | -> | Plus |
| 3L | 8039875..8040004 | 196..325 | 100 | -> | Plus |
| 3L | 8045891..8045946 | 326..381 | 100 | -> | Plus |
| 3L | 8046570..8047161 | 382..976 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:44:15 Download gff for
FMO02982.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 7973914..7974082 | 24..195 | 98 | -> | Plus |
| arm_3L | 8032975..8033104 | 196..325 | 100 | -> | Plus |
| arm_3L | 8038991..8039046 | 326..381 | 100 | -> | Plus |
| arm_3L | 8039670..8040261 | 382..976 | 99 | -> | Plus |
