FMO02984.5prime Sequence
1224 bp (1019 high quality bases) assembled on 2008-07-02
> FMO02984.5prime
AGCATACATTATACCAAGTTATCAGTCGACATGCCGCTGCTATTTACGGG
CTTCAACGCATTTGGCCAGCATGAATGTGTAAGCGGCGACGTCGACTGCG
CAGCCGGCTTCAGCGAATTAAATGCGCCAGTCTCGACTCAGAACCAGTGC
ACGATTTCGATCGGCTGGCGGTATGCGGCCCTCGCTTTTGGCCGGAAGTT
GTGCCTGCGTGGGCTCTTGGATGATGGCCCAAATGAGTGCGTGACCCTGG
AAGCAACGGGGAACATAAGGGCCCTTGCCGCTGCCGATTCCCACTGCCTG
GTGCTACTCCAAAGCGGTCAGCTTTACAGGGTGCAACCAAAACTGCAAGC
GGAACTGGTGGCTGTTAGACTAGAAGCTGCTCCCAGATCCAATTCGGGTA
CAAAGCGCTCTATCTTTGGGGCTGCCAAGGCGCCTTCGTCGCCGATCATA
GAGCATATTGCATGTGGATCGCACATAAACGTAGCGATAAGTTCGGAAAA
CTGTGTCTACAGCATTCCCAGCTGCCTGCATCAGTTTTCCGAGCGCCAAT
TTCGGGTGAAGCAGCTCCAATGCGGCCATGAACATGCCGTGCTCCTCAAT
GCCAATGGCGACGTGTTCACCTGGGGAAATGGACTACGCGGACAGTTGGG
TCTGGCGGAACTGAGAGTGGAGGAGACGCCTCAATTGCTGGAGGCGCTGG
CGGGGATCAAGATAACTCAAATTGCTGCCGGTGGTTGGCACAGTGCGGCC
ATATCCGCCTTTGGAGACCTCTACACCTGGGGCCTCAACTGCAGCGGTCA
GCTGGGATTGCGTGTGATGAAACCCGGTGGCGTCCTCAAAGAGCCCACTG
TATTTCCGCTGCCCCAGTTGCAAGATCTGCCCGAATGTGCCTGCTCCCAA
AGCGGGGAGAGCAACGATGATTGCCCAACCGCTGAGGGTGTTTGCTGATC
TCGTCACACTCTGCTGATCCGCCGATGCCGGCGCCTATGGGTCAGTGTTG
GTGCAAGCCACGTCACTTTGCCAGCAGCCTCCAAGACCTGTCCTATGTGG
AATGCTTTTCAGGCCTGAAGGTATTCCGATGAACCTTACTGGGATAATGT
TCTCTGTGGCATGTCCAAGCCTGTTCAATTGAAGTGTTACGCTGCCAAGC
TTCCAAGACCATCGTTGGCCGCGACCCAGTATGGTCCATAATCATATCAA
TAACTCATAAGTCATATAGCAGGA
FMO02984.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:33:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6678-RA | 2843 | CG6678-RA | 479..1560 | 31..1109 | 5005 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:33:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 21888034..21888554 | 115..635 | 2605 | 100 | Plus |
| 3R | 32079331 | 3R | 21888837..21889239 | 710..1109 | 1440 | 93.8 | Plus |
| 3R | 32079331 | 3R | 21887507..21887591 | 31..115 | 425 | 100 | Plus |
| 3R | 32079331 | 3R | 21888703..21888778 | 636..711 | 380 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:33:39 has no hits.
FMO02984.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-02 17:02:15 Download gff for
FMO02984.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6678-RA | 462..1559 | 24..1118 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:30:08 Download gff for
FMO02984.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6678-RA | 474..1571 | 24..1118 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:21:19 Download gff for
FMO02984.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6678-RA | 474..1571 | 24..1118 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:21:19 Download gff for
FMO02984.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 21888035..21888554 | 116..635 | 100 | -> | Plus |
| 3R | 21887507..21887591 | 31..115 | 100 | -> | Plus |
| 3R | 21888703..21888778 | 636..711 | 100 | -> | Plus |
| 3R | 21888839..21889250 | 712..1118 | 94 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:30:08 Download gff for
FMO02984.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 17713229..17713313 | 31..115 | 100 | -> | Plus |
| arm_3R | 17713757..17714276 | 116..635 | 100 | -> | Plus |
| arm_3R | 17714425..17714500 | 636..711 | 100 | -> | Plus |
| arm_3R | 17714561..17714972 | 712..1118 | 94 | | Plus |
