FMO02987.5prime Sequence
1212 bp (896 high quality bases) assembled on 2008-07-02
> FMO02987.5prime
TATAGCATACCTTATACGAAGTTATCAGTCGACATGTTCAAGAGGCCATA
CAACACCACACCAAGCAACAACAACAGAACCCAGAACACCATCACCAATC
CAAGTCCGAACTCGAATTCGAATCCGAATCAGAATCAGAATCGGATTCGG
AGTCAGATCAATAACACCACACAAGATGATTCGCAACGCCGGCAAGTGGA
AGCGTATCGCATTTACTACGAAGAAATCGTCGTCAAGCAGGCTAATGCCC
GTGCTCGTCTTGGCGACAGCAGCACACGTTGCAGCAACAGCATCGCCAGC
CGCAATACCAGCAGCAGTGGCCGCGGCAGCAGTTTCGTCGACAAGTTCGC
TGACTTTGTGACCCACTCGAGCCGAACTTCTCCCATGCCCAATCCCCCTG
CCCAGTCCCATGTGCCGCCAACCACAAGAAATGCGACTAATGCAATCCTT
CCTCCCAAAACAAACAGCTGCAGCAGCAGCAGCGGCGGCAACAGCAGCAG
CAGCGGAGCCACTAGCAACAATGCATCCACCGTGGTGAGCAGCAGTGCGA
GCAATGGCCTCAAGCCGGCGGCCAAGAAGACACCAGTCATTCTGCTGGCC
GCTCGTGGTGCCGCCAAGCAGCCGCAGCTCAGCATTCTTAATGGCAACAC
CAAGGCCGGAACCGGAAATGCAAGCGGAGGCGGCGGCGGTGTTACATTGG
TGCGCGTCAATGCAACCAATCGCAATCAGCGCCAAGTTATCGTCGCTCCG
GAGGCAACACCTGTGGAACACCAGCAGCCAGTGGTCGAGGAGGAGATGTT
GGCCGAGACGATGAGCTCGACGAGGACATGGATGAGGATGCAGTTGCCTG
TCCGGGCTCTCCTCCTCGACTGCCCAGATCCTGCGAAAGTTCCGCATACC
CAAGGGGACTGTCGTGACCGCCAAGTCGGGGGAGAACTACCTGGCAATGC
GACACAACCACCCTCGCCGCCGGTGGTTCGTCAATTTGGTTAGCTTCCGC
GTTGAGCTTCGCTACATAGAGACGAAGACGACTTCTTCAAGGAGCTCATC
AGACTACTCTGTCTAGGAAATCTCCACAGAGCCGTCAGGACACCGAATGG
AGAACAACAACGCCATGCCTTAATTGATCACCGGAATATGGAATGCCAAA
CAACTGATCGTCAGGCTGGTGCCATCGCCTCTGTTTAGTGGAATGTGTGA
ACCTCCAGGATC
FMO02987.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:36:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| seq-RB | 5631 | CG32904-RB | 3203..4223 | 34..1048 | 4665 | 97.6 | Plus |
| Kdm4B-RE | 5718 | CG33182-RE | 3290..4310 | 34..1048 | 4665 | 97.6 | Plus |
| CG17724-RE | 3779 | CG17724-RE | 892..1912 | 34..1048 | 4665 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:36:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13177961..13178981 | 1048..34 | 4490 | 97.6 | Minus |
Blast to na_te.dros performed 2014-11-28 19:36:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2379..2984 | 51..653 | 198 | 54.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6742..6822 | 263..343 | 162 | 66.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6784..6853 | 263..332 | 161 | 70 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6763..6844 | 263..344 | 158 | 65.9 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1079..1149 | 264..331 | 158 | 73.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2303..2389 | 260..343 | 157 | 67.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6800..6866 | 267..333 | 155 | 70.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2363..2439 | 263..339 | 151 | 66.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6725..6790 | 267..332 | 150 | 69.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2343..2423 | 264..344 | 144 | 64.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1524..1574 | 282..332 | 138 | 74.5 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3252..3345 | 235..327 | 125 | 60.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2357..2425 | 263..331 | 120 | 63.8 | Plus |
| transib2 | 2844 | transib2 TRANSIB2 2844bp | 2532..2567 | 148..113 | 117 | 80.6 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1536..1587 | 264..315 | 116 | 69.2 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1109..1163 | 261..315 | 113 | 67.3 | Plus |
FMO02987.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2010-07-30 09:26:57 Download gff for
FMO02987.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17724-RA | 984..1988 | 34..1032 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:43:56 Download gff for
FMO02987.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17724-RB | 369..1373 | 34..1032 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:24:14 Download gff for
FMO02987.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17724-RE | 892..1896 | 34..1032 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:24:14 Download gff for
FMO02987.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13177947..13178981 | 34..1061 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:43:56 Download gff for
FMO02987.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9065452..9066486 | 34..1061 | 97 | | Minus |
