FMO02988.5prime Sequence
1106 bp (775 high quality bases) assembled on 2008-07-02
> FMO02988.5prime
GTATAGCATACCTTATACGAAGTTATCAGTCGACATGGAACTTGCAGAGA
AATCGACAGCAGCACCTGGTGGTGCCACATCCTCCACTGCATCGAGTGCC
GCTGGCAGTAAATCGGGATCCGGTTCCAGTGCTGGCAATGGTACTGGGGC
CAACTCAAACAACAAGCAGGCGACGCTGTCGCGAAATCTATGGGTTTCTG
GGCTGTCCACTTTAACCCGTGCCAGCGACCTTAAGGCAATCTTCTCCAAG
TTTGGCAAGGTGATTGGGGCCAAGGTGGTCACCAATACCCGTACTCCGGG
CACTCGCTGCTACGGATACGTGACCATGTCCTCCTCGGCAGACGCCTCGC
GTTGCATCGAAAATCTGCACCGCACCGAATTGCATGGACGCATCATTTCG
GTGGAGCGTACCAAGAACGAGATTGGCGGCAGCTTGAATTCCAAAGAGGG
CAAGGGCAAGGCTCCGGGCGACGCCGGAAACAAGAAGAAGGAAGACGACA
GTGGCAAAAAGTCTGGTAGTGGCAAGGGCTCCAGCTCCAACAGTGGCGAT
GACAAGAAGGGCGGCGATGGAAACGGCGACAGCAAGTCTGTTGGTGGCGA
TTTAAAGCGTGATGGCAAGGAGAGCAACAGGGCCCGCAGCCGTCGCAACG
ATGAACGGGGCAAGTCGTTGGCAAGCCAGGATAGACCGCGCCACGATCGC
GAGCGATCCGCAAGGGTAGTCAGGATCATCGTTCGGGGCGCATCCACGCG
ACGTCAACCGTGAGATTCACAGCGCCAGAGGGAGCGCGAGCGTCTCAACG
AGAGATGCTGTCCTACCAGAAGATACGTGAGGAGCGCGAGCGCCAGCGCC
TTCCGGGAAAGGGAGCGTGAGCTGCCGTGAGGAAGAGCGTCCCCGTCGGG
AGGCCCGTGAACGCCAGCGAATCGAAGAGGAACATTCTGCAAGAAGAACA
GCACAACTCTCCTTGGTGGAAGCGGGCACCGGCTCAAGCGGGAAACGCCC
AGCTTTTTGCGGATGGAACCGCAAGCCCAAAACTTGGAAATAAAAAAAAT
CAGTCTGCACCGTCCTTCGAAACTAAACAGACAACAAATGAAGACGGCTA
AAAATT
FMO02988.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:09:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Saf-B-RC | 4332 | CG6995-RC | 1817..2832 | 33..1051 | 4375 | 96.1 | Plus |
| Saf-B-RA | 4003 | CG6995-RA | 1817..2832 | 33..1051 | 4375 | 96.1 | Plus |
| Saf-B-RB | 3124 | CG6995-RB | 951..1953 | 46..1051 | 4310 | 96 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:09:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24819714..24820638 | 33..956 | 4140 | 98.2 | Plus |
Blast to na_te.dros performed 2014-11-28 20:09:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| invader5 | 4038 | invader5 INVADER5 4038bp | 3666..3753 | 1079..993 | 113 | 60.2 | Minus |
FMO02988.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-02 17:01:22 Download gff for
FMO02988.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6995-RC | 1018..1929 | 23..933 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:04:35 Download gff for
FMO02988.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Saf-B-RA | 1808..2719 | 23..933 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:39:51 Download gff for
FMO02988.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Saf-B-RA | 1808..2719 | 23..933 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:39:51 Download gff for
FMO02988.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24819705..24820616 | 23..933 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:04:35 Download gff for
FMO02988.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20645427..20646338 | 23..933 | 98 | == | Plus |
