FMO02991.5prime Sequence
1070 bp (1029 high quality bases) assembled on 2008-07-02
> FMO02991.5prime
TTCGTATAGCATACCTTATACCAAGTTATCAGTCGACATGCGGAATATCA
GAAATCTCAAGGATCCGACGACATGGACGCGGATTCTCCTGCCGTTCCTC
TCCTGCCTACTCCTCGCTGTCCAGGCGGATCTGGTGAATGTCACCTGCGG
GGAGTATGGCAATACCATCACTTGCGACTGCAATAACTCCGACCAGACCA
TGGCTTTGCCATCGTTGCGCGGAAATGTCTACATGATTGAGATCCGCAAT
TGCCGCGATCTTCTGGTGGAGGCCAATCGGCTGGCGAACACGATGGGCCT
GCACAAGGTGGTCTTCCGCCAGGTGGGCCAACTGGTGCTCCGGGAGCACG
CGCTCAGTGTGCCGCGATATGCCAGCAATAAGGCACTGATCGTGGAGTTC
GAGCAGACGAACCTCAAGCTGATCGAATCGCATGCCATCAACGGCAACAT
CGAGGAGATCTCATTCGTGGGCGGGCGGATTGAGCTAATGAAGCCTTTCG
GATTCACCACCACCAAGGATAGTGCCATACTGCTCAAGCTGGACGGGGTC
ACCATTCAGCGCATCGAGAGTCAAGCCTTTAAGAAATTCGCCGTGGAGCA
GATGAGCATCGCCAATTGCCAATTCCTGGGCGATCTGCCCACGCGTGCCT
TCTACGAGCTCGAGGTGACCAACGAGCTGAGTCTGCGAGGTAATCAGTTC
CAGGAGGTCCACTCCCATGCCTTCTCCTTCAAGCTTGTCTCCAAGTTAAG
CCTGAGTGATAATCATTTCCTATCCGTCGATGGTGAGTGGTTGGAAGCCC
AAATCAGAGATGCGGCGACAATACGAGGAAACGAATTCGGGGCCACAAGT
GAGATTGCGTTTCGCAGCCTCACCGTTCATCGTTCGTATCAGTTGAGCGA
GCGTCTGGAGCTGCGTTTCAACAACAACAGTCTGCGCAGCTCGCGACCAG
GTGCAGATCCTCGGGTCGATGGCACCGCCGAGATGTGCCACCACAACCCT
TCAATTCGACATAGCTTCGCGCCTCATGTACGCCGATATCGCTATTAATA
TGCTGGAGCTGTGAACAGCT
FMO02991.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:09:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5541-RB | 2304 | CG5541-RB | 179..1216 | 37..1070 | 4925 | 98.8 | Plus |
| CG5541-RA | 2514 | CG5541-RA | 389..1426 | 37..1070 | 4925 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:09:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15049758..15050139 | 194..575 | 1910 | 100 | Plus |
| X | 23542271 | X | 15050415..15050754 | 735..1070 | 1290 | 94.7 | Plus |
| X | 23542271 | X | 15049106..15049265 | 37..196 | 800 | 100 | Plus |
| X | 23542271 | X | 15050200..15050359 | 575..734 | 800 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 20:09:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gypsy10 | 6006 | gypsy10 GYPSY10 6006bp | 5301..5354 | 797..745 | 114 | 70.4 | Minus |
FMO02991.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-02 17:02:20 Download gff for
FMO02991.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5541-RB | 1607..2648 | 30..1070 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:04:45 Download gff for
FMO02991.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5541-RA | 400..1441 | 30..1070 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:40:00 Download gff for
FMO02991.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5541-RA | 385..1426 | 30..1070 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:40:00 Download gff for
FMO02991.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15049102..15049265 | 30..196 | 97 | -> | Plus |
| X | 15049761..15050138 | 197..574 | 100 | -> | Plus |
| X | 15050200..15050359 | 575..734 | 100 | -> | Plus |
| X | 15050415..15050754 | 735..1070 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:04:45 Download gff for
FMO02991.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 14943135..14943298 | 30..196 | 97 | -> | Plus |
| arm_X | 14943794..14944171 | 197..574 | 100 | -> | Plus |
| arm_X | 14944233..14944392 | 575..734 | 100 | -> | Plus |
| arm_X | 14944448..14944787 | 735..1070 | 96 | | Plus |
