FMO02993.5prime Sequence
1239 bp (994 high quality bases) assembled on 2008-07-02
> FMO02993.5prime
GTATAGCATACTTTATACGAAGTTATCAGTCGACATGCGCGAATGTATCT
CTATCCACGTGGGCCAGGCCGGAGTCCAGATTGGAAATGCCTGCTGGGAG
CTCTATTGCCTGGAGCACGGCATCCAGCCCGATGGCCAGATGCCCTCCGA
CAAGACCGTAGGCGGAGGTGATGACTCGTTTAACACCTTCTTCAGCGAGA
CTGGAGCTGGCAAGCACGTGCCTCGCGCCGTGTTCGTGGATCTGGAGCCC
ACTGTGGTCGACGAGGTCCGTACTGGAACCTACCGTCAGCTGTTCCACCC
CGAGCAACTGATCACCGGTAAGGAGGATGCGGCCAACAACTACGCCCGTG
GCCACTACACCATTGGCAAGGAGATCGTCGACCTGGTGCTGGACAGGATC
CGCAAGCTGGCCGATCAATGCACCGGTCTGCAGGGCTTCCTCATCTTCCA
CTCGTTCGGTGGAGGTACCGGCTCCGGCTTCACCTCGCTGCTGATGGAGC
GTCTCTCCGTGGACTACGGCAAGAAGTCCAAGCTGGAGTTCGCCGTGTAC
CCAGCTCCGCAGGTGTCCACCGCCGTGGTGGAGCCCTACAACTCCATCCT
AACCACGCACACCACCCTCGAGCACTCCGACTGCGCCTTTATGGTGGACA
ACGAGGCCATCTACGACATCTGTCGCCGAAACCTGGACATCGAACGACCC
ACTTACACTAACCTGAATCGTTTAATCGGCCAAATAGTGTCCTCGATCAC
CGCCTCTCTGCGATTCGATGGAGCCCTAAATGTGGACCTCACCGAGTTCC
AGACCAACCTGGTTCCTTACCCCCGCATCCCACTTCCCGCTGGTGACGTA
CGCTCCCGTCATCTCCGCCGAGAAAGCCTACCACGAGCAGCTGTCGTGGC
CGAGATCACAACGCCTGCTTCGAGCCAGCCAACAAGATGGTCAAGGTGGA
TCCCGTCACGGCAAGTAACATGGCCTGCTGCATGCTGTATCGCGGCGATG
TTGTGCCCAAGGACGTGAACCGCCGCATCGCCACCATCAAGAACAAAGCG
TAACCATCAGTTCGTGAACTGGTGCCCACCGGGCCTTCAAGGGTGGCTAC
ACTACAGCCACCAACTGGCGTTCCAGGCGGGAACTCGACAAGTGTCAACG
TGTCCGTGTGCTATGGTGTCCAATTCATGGCATTGGCCGAGCCTGAGGTC
CGTCTGGACACAAAGTTCAATCTGAGTATACCGCCATGA
FMO02993.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:51:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| alphaTub84D-RA | 1980 | CG2512-RA | 507..1698 | 35..1225 | 5060 | 96.1 | Plus |
| alphaTub84B-RA | 1752 | CG1913-RA | 144..1335 | 35..1225 | 3775 | 89 | Plus |
| alphaTub85E-RA | 1560 | CG9476-RA | 102..1294 | 34..1225 | 2775 | 83.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:51:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 7531259..7532301 | 35..1077 | 4765 | 98.4 | Plus |
| 3R | 32079331 | 3R | 7087233..7088243 | 37..1046 | 3540 | 91.1 | Plus |
| 3R | 32079331 | 3R | 9732286..9732779 | 555..62 | 1570 | 87.9 | Minus |
| 3R | 32079331 | 3R | 9731666..9732152 | 1046..561 | 1010 | 82.8 | Minus |
| 3L | 28110227 | 3L | 9682200..9682728 | 302..830 | 590 | 74.1 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:51:45 has no hits.
FMO02993.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-02 17:00:54 Download gff for
FMO02993.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| alphaTub84D-RB | 387..1458 | 23..1096 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:23:57 Download gff for
FMO02993.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| alphaTub84D-RA | 495..1566 | 23..1096 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:39:17 Download gff for
FMO02993.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| alphaTub84D-RA | 495..1566 | 23..1096 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:39:17 Download gff for
FMO02993.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 7531247..7532318 | 23..1096 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:23:57 Download gff for
FMO02993.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 3356969..3358040 | 23..1096 | 97 | | Plus |
