FMO02995.5prime Sequence
1188 bp (1041 high quality bases) assembled on 2008-07-02
> FMO02995.5prime
GTATAGCATACATTATACGAAGTTATCAGTCGACATGAACATCGACGACT
ACGAATCGCTGCCCACCACCAGTGTGGGTGTCAATATGACGGCGGGCGCA
ATTGCGGGCGTGCTGGAGCATGTGGTCATGTATCCGCTGGACTCCGTCAA
GACGCGAATGCAGAGCCTTTCACCGCCCACAAAAAACATGAACATAGTGT
CAACCCTTCGGACTATGATCACGCGTGAAGGCCTGTTAAGACCCATTCGG
GGAGCCAGCGCCGTGGTGCTGGGTGCTGGACCAGCACACTCGCTATACTT
TGCCGCCTACGAGATGACCAAGGAGCTCACGGCCAAGTTCACATCGGTGA
GAAACCTCAACTACGTGATTTCGGGAGCGGTGGCCACCCTCATACACGAC
GCCATTTCTAGTCCCACGGATGTGATCAAACAGCGTATGCAGATGTACAA
CTCGCCCTACACATCGGTGGTATCCTGCGTGCGGGATATCTACAAGAGGG
AAGGCTTCAAGGCCTTCTACCGGGCATATGGCACGCAACTGGTCATGAAT
CTACCATATCAGACAATACATTTTACCACATACGAGTTTTTCCAGAACAA
AATGAATCTGGAACGCAAATACAATCCACCAGTGCATATGGCAGCGGGTG
CAGCAGCCGGTGCGTGTGCGGCGGCTGTAACCACGCCCCTGGACGTGATC
AAGACGCTACTAAATACTCAGGAGACAGGACTGACGCGCGGCATGATCGA
GGCCAGTCGAAAGATCTACCACATGGCCGGTCCATTGGGCTTCTTTAGGG
GCACGACCGCCCGCGTTCTGTACTCAATGCCCGCCACGGCCATCTGCTGG
TCGACGTACGAGTTCTTCAAGTTCTACCTGTGCGGCCTGGACGCTGATCA
GTACAAATCGTCAATTACCGGGCAGCTCGGAGCCCCGCAAGCGGACTACG
TGCTGCCGAGACTACGGATGAGAGCAGATCGATCAGGAGCGCGAGGCGGC
AAAGGAGAAGACACACGCCACCCTGCACTCTGCCCGACCTCGTCAATGCC
TCCGGTGCCATTAAGACGGGGTGCGAGCTGACGACCCCGCCCGCCGGCAC
ATTCATCCTGCACACGCGCACGGACGTGAAAGTTCCTACAGCGGCTTCGA
CACGCTAGCCTTTTACACATGTGGCGCCGGTCCGAGGA
FMO02995.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:37:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mfrn-RA | 3037 | CG4963-RA | 711..1836 | 34..1144 | 5120 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:37:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27944052..27944394 | 1097..762 | 1220 | 95.1 | Minus |
| 3R | 32079331 | 3R | 27944779..27945015 | 601..365 | 1185 | 100 | Minus |
| 3R | 32079331 | 3R | 27944553..27944714 | 763..602 | 810 | 100 | Minus |
| 3R | 32079331 | 3R | 27945077..27945203 | 365..239 | 635 | 100 | Minus |
| 3R | 32079331 | 3R | 27947194..27947311 | 151..34 | 590 | 100 | Minus |
| 3R | 32079331 | 3R | 27945252..27945342 | 240..150 | 455 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:37:17 has no hits.
FMO02995.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-02 17:01:53 Download gff for
FMO02995.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4963-RA | 694..1830 | 30..1148 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:44:09 Download gff for
FMO02995.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mfrn-RA | 706..1842 | 30..1148 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:24:23 Download gff for
FMO02995.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mfrn-RA | 706..1842 | 30..1148 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:24:23 Download gff for
FMO02995.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27943991..27944392 | 764..1148 | 93 | <- | Minus |
| 3R | 27944553..27944714 | 602..763 | 100 | <- | Minus |
| 3R | 27944779..27945014 | 366..601 | 100 | <- | Minus |
| 3R | 27945077..27945201 | 241..365 | 100 | <- | Minus |
| 3R | 27945252..27945340 | 152..240 | 100 | <- | Minus |
| 3R | 27947194..27947316 | 30..151 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:44:09 Download gff for
FMO02995.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 23770799..23770923 | 241..365 | 100 | <- | Minus |
| arm_3R | 23770974..23771062 | 152..240 | 100 | <- | Minus |
| arm_3R | 23772916..23773038 | 30..151 | 98 | | Minus |
| arm_3R | 23770275..23770436 | 602..763 | 100 | <- | Minus |
| arm_3R | 23770501..23770736 | 366..601 | 100 | <- | Minus |
| arm_3R | 23769713..23770114 | 764..1148 | 93 | <- | Minus |
