FMO03001.5prime Sequence
1245 bp (863 high quality bases) assembled on 2008-07-09
> FMO03001.5prime
CGTATAGCATCCATAATACGAAGTTATCAGTCGACATGTCGAATCCCGAG
ATTGAGGCTCAACTTGCCCCATTGAGGGAACGAGTTCAGGAGCAGGGTAA
CCTGGTGAGGGATCTCAAGGCGAAGGGTGCCCCCGAGATCGATGTGAAAA
AGGCAGTAGCCGAGCTGAAGGCACGCAAGAAGCTGCTGGAGGACAAAGAG
CTCGCCCTGACCCCCAGTGTCGTTAGTTTCGATCGCGCGAAGATGGAGGA
TCTACTCAAGCGTCGCTTCTTCTACGACCATAGTTTCGCAATTTATGGCG
GCATCACCGGCCAGTACGATTTTGGACCCATGGGCTGTGCCCTCAAGTCC
AACATTCTGGCCCTATGGCGTCAGTATTTCGCCCTCGAAGAGCAAATGCT
GGAGGTGGACTGCTCTATTCTGACTCCCGAACCTGTGCTCAAAGCCTCTG
GTCATGTGGAGCGTTTCGCTGATCTGATGGTCAAGGATGTCAAGACCGGC
GAGTGCTTCCGCCTGGATCATCTCATTAAGCAGGCTTTGGAAAAGCTATC
TAAGGCCAAGGATGCAACTCCCGCCCTGCAGGCCGAGTGTGAGGATATTA
TCATTAAACTGGATGGCCTGAACAAACAGGAATTGGCTGGTGTCCTGGCC
AAATACAACATCAAATCTCCATTAACCGGCAATGATTTAACAGAACCGAT
TGAGTTCACCTGATGTTTGCCACCCAAATTGGACCCACTGGCTTGCTCAA
GGGATTCCTGCGGCCCGAAACTGCCCAGGGTATCTTCGTCAACTTCAGCG
ACTGCTGGAATTCATCAAGGCAGCTTCCTTCGCTGTGGCTCAATTGGCAC
TCCTTCCGAATGAAATCTCACCCCGATCGGGATTGATGCGTGTGCGAGAG
TCCCCATGGATAGATGAACATTCCTGTGACACCCATGAATCACGAACCAT
CACAAAATTAGCAACATCAAATCCGAAAAAGTTGACCCACTACTCGCCTT
GCACCAGAATGAATGAAAGTCTTGCCCGCTCAGGTGCCACATCGGCAACA
TTTGCATCCAAACTGATGACTAATGAGACACTAGGTAACTATAATGACCC
GCATCAAAATATCCCTGGTTGGACATTGGATCAACATGAAATGCCATGGA
ATTCCGAGAAACACAAGTTCCATGGAAGATCTACAATGAAACTGCAAATG
CAAGTAGTGAAGATGGCCGAGAAACTTCATGACACCTCCTAAGCG
FMO03001.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:26:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Aats-gly-RC | 2476 | CG6778-RC | 309..1385 | 35..1104 | 4430 | 95.3 | Plus |
| Aats-gly-RB | 2545 | CG6778-RB | 378..1454 | 35..1104 | 4430 | 95.3 | Plus |
| Aats-gly-RA | 2457 | CG6778-RA | 290..1366 | 35..1104 | 4430 | 95.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:26:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 15095519..15096585 | 35..1093 | 3955 | 95.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:26:52 has no hits.
FMO03001.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:00:19 Download gff for
FMO03001.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aats-gly-RB | 334..1212 | 31..901 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:02:42 Download gff for
FMO03001.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aats-gly-RA | 286..1164 | 31..901 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:14:43 Download gff for
FMO03001.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aats-gly-RA | 286..1164 | 31..901 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:14:43 Download gff for
FMO03001.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 15095498..15096393 | 16..901 | 97 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:02:42 Download gff for
FMO03001.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 15088598..15089493 | 16..901 | 97 | == | Plus |
