FMO03002.5prime Sequence
1295 bp (985 high quality bases) assembled on 2008-07-09
> FMO03002.5prime
CTTCGTATAGCATACATTAAACGAAGTTATCAGTCGACATGATGAACGGG
CGCAGCATCGGCATGCTGAAAAAGCTCAGGCACACCTGGCGCACGTTTCC
ACGCCTTATGGCCACCAAGGTGACCAGTCTGGGTGGCGACGAGGTGGGCA
GTGGCACAGGAATCGGACAGATCACCGGCGGCGTGCGTACAAGTGATGGG
CCACAGAAAGTGAACACGCCTTCCAAGGAGATTGTCACCCACCTGCCACC
TCTCACCGAGCCACTGCCCAACCTGCCGGAGGCCGTTTACGCAGCTCCAC
TGGCGGAAAGCGCCATTACGAAGGTAACGACGCTGCCGAACGGTCTGCGG
ATTGCCTCGGAACCGCGGTACGGACAGTTCTGCACTGTGGGCCTGGTTAT
CGACTCCGGGCCGCGCTACGAAGTCGCTTACCCCAGCGGCGTGTCGCACT
TTCTCGAAAAGCTAGCTTTTAATTCCACAGTCAACTTTCCCAACAAGGAC
GCCATACTTAAGGAGCTGGAGAAGAACGGAGGCATTTGCGACTGTCAGAG
CTCGCGGGACACGCTCATTTATGCCGCCAGCATCGACAGCCGGGCTATTG
ATTCCGTGACGCGTCTGCTGGCGGACGTCACTTTGCGGCCCACACTTAGC
GACCAGGAGGTGAGTCTGGCCAGGCGGGCCGTCAACTTTTGAGCTGGAGA
CACTGGGCATGCGGCCTGAGCAGGAGCCAATACTGATGGACATGATCCAC
GCGGCAGCATTCAGGGACAATACCTTGGGCCTGCCCAAGCTATGTCCCCT
TGAGAACCTGGACCACATAAACCGCAATGTGCTAATGAACTACCTTAAGT
ACCATCACTCTCCCAAGCGCATGGTCATCGCTGGTGTAGGCGTGGATCAT
GATGAGCTGGTTAGCCATGGTGCAAAGATACTTTGGTGGAGGACAAAGCC
CATCTGGGAAACGGAAGCCCTTGGAAGGATTCGGGAAGTAAGCAAGAAAA
AACGTCTATTGCACAATACAGCCTGGCGGATTAGTAAAAGAACAATGGCG
AAATCCCCCATTCTTATGCGGCCGCTGGGCCTACAAAACCTGTGCCCCAT
GTTATTCTCTCGGAATTGAAGGCTTGTTTCCCCCCAGGAACAAGGACTTT
CGGTTTCCCTTTGGTGGCCTTCCTGTGAATTTCTCTTAAATTGCCCAAGA
TTGAATTCCCATTTTTCTCGCAGAGGGCGGACCTGGACAGGACATGGATT
ACCTTCGCCACCCCTGTTAATTACACCAGAGGGGAGTGCCATTAT
FMO03002.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:12:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8728-RA | 1935 | CG8728-RA | 158..1250 | 37..1149 | 4885 | 96.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:12:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7937957..7938375 | 893..474 | 2050 | 99.8 | Minus |
| 2R | 25286936 | 2R | 7938437..7938819 | 473..91 | 1900 | 99.7 | Minus |
| 2R | 25286936 | 2R | 7937763..7937902 | 1038..892 | 350 | 90.5 | Minus |
| 2R | 25286936 | 2R | 7938898..7938957 | 96..37 | 300 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:12:42 has no hits.
FMO03002.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:06:25 Download gff for
FMO03002.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8728-RA | 209..1259 | 31..1097 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:15:52 Download gff for
FMO03002.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8728-RA | 154..1204 | 31..1097 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:51:07 Download gff for
FMO03002.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8728-RA | 154..1204 | 31..1097 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:51:07 Download gff for
FMO03002.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7938900..7938961 | 31..94 | 95 | | Minus |
| 2R | 7937959..7938375 | 474..891 | 99 | <- | Minus |
| 2R | 7938437..7938815 | 95..473 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:15:52 Download gff for
FMO03002.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3825942..3826320 | 95..473 | 100 | <- | Minus |
| arm_2R | 3825464..3825880 | 474..891 | 99 | <- | Minus |
| arm_2R | 3826405..3826466 | 31..94 | 95 | | Minus |
