FMO03004.5prime Sequence
1265 bp (964 high quality bases) assembled on 2008-07-09
> FMO03004.5prime
CTTCGTATAGCATACATTAAACGAAGTTATCAGTCGACATGGTTTACCCC
AGTGACCCGTCGGACGCCAACAACGAGGAGCTGGCGCTGGAGCACAGTGT
TGCACATGGCAATGTCCACGGTAACGGCACTGGCACTGGTGGTAGCTCAC
CCGGGACAACAACTGCTCCGAACGGGGACAACAAAGTCAATCAGCGCCAT
TACGAGCCGGCCGAGCGCTTCATCATCACCAAGAACGTGGTCGTGATAGG
CCTGGCTTTCATGATTCACTTCACGGCCTTCCACGGCACATCGAATCTGC
AGAGCTCGGTGAACGCGGATAAGGCCCTGGGCACCACCACGCTTGCCGTC
ATCTACGGCTCGCTGATACTGTCCAACATCTTCCTGCCGATGACCGTGAT
AAGATGGTTCGGTTGCCGGTTGACCATGGCGCTGGCCCTCTTCGCCTACA
TGCCCTACATAGCCGCCCAGTTTTACCCACGGTTCGAGACCCTAATCCCG
GCGGCCCTGATGGTGGGTTTCGGTGGCGGGCCATTGTGGTGCTCCAAGTG
CACCTACCTATCCACCGTCTCCGAGGCACTTACCCAGGTGCGGGGCAACA
AGTCGCGTAAGGATGTGAACACCGTCAAGTTCTTCGGCCTGTTCTTCATC
TTCTACCAGATGGCCCAAGTGTGGGGCAACCTCATATCCTCCTCGGTTCT
AACCCTGAGTGCCCCTGCTGCCCAATCCGCGGCAAATGATTCTTTCGAGC
TGGAGGTGCAGCGGGAACTGGAGAGAAACAGGGTGGCCGAACTCTGCGGG
GCCCGTTTCTGTCCCGGAGTGGGAGCAGAGGCCAATCCAAACCTAGTGCC
CCCAGCTCCGGAGCAGATCCAGCTGCTCAACTCCATCTTCCTCACCTGCA
TGGCAGCGGCGGTGGTCATGATGATCTTCGGCGTGAGCTCCCTCAAACGC
TATGGGAGTAAAGCGCGGAGACACTGGCGACGGGATGTCAGAGCTAAACT
TCTCACGGTGACCATAATCTTCTGCCGCAACGTCGCCAAATCCTGATGCT
GCCCATCACGAATGTTTCATCGGGCTGGAAGGAAGCCTTCCTGGACCGTG
AAACTTCACCGTTCGTTTATGCCTGGCGGGATGGGTGGGATCCTCAAAAT
CCGGTTCCCAATGCAATGCCTTGGGGCGTGCCAATGGCGTGCTGCGGATC
TCCAAGGCTCCCCTGTGTGTGAAGCGCACAATTGGGAAGAGATCATACTC
CTCGTGTAGCGCATC
FMO03004.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:41:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2121-RB | 1973 | CG2121-RB | 225..1357 | 36..1174 | 5075 | 97.2 | Plus |
| CG2121-RA | 1910 | CG2121-RA | 162..1294 | 36..1174 | 5075 | 97.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:41:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8397614..8398161 | 949..402 | 2725 | 99.8 | Minus |
| 2R | 25286936 | 2R | 8403891..8404258 | 403..36 | 1825 | 99.7 | Minus |
| 2R | 25286936 | 2R | 8397213..8397351 | 1094..955 | 360 | 90.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:41:28 has no hits.
FMO03004.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:04:38 Download gff for
FMO03004.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2121-RA | 157..1247 | 36..1129 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:55:07 Download gff for
FMO03004.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2121-RA | 162..1252 | 36..1129 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:15:01 Download gff for
FMO03004.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2121-RA | 162..1252 | 36..1129 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:15:01 Download gff for
FMO03004.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8397614..8398159 | 404..949 | 99 | <- | Minus |
| 2R | 8403891..8404258 | 36..403 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:55:07 Download gff for
FMO03004.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4285119..4285664 | 404..949 | 99 | <- | Minus |
| arm_2R | 4291396..4291763 | 36..403 | 99 | | Minus |
