FMO03006.5prime Sequence
821 bp (685 high quality bases) assembled on 2008-07-09
> FMO03006.5prime
ACTTCGTATAGCATACAAAAAAAAGAAGTTATCAGTCGACATGTTCGCCA
CCCAAAACACCTTTCTGAAGTTGCTGACCCTGTGCGCCCTGGCACATTCT
ATAACCGCATTGGCCCTGCAGGAACGGTCTCCGACTCCAGGAGGATCTGC
TCCCTTGGATTCCAGCCACAAGTACTTGATAGTGCGCGGTGAGTCGCCCA
GTGAATCCCAGGAGCATGTGGAGTTCGATAATGCCGCCACCCTGCTCCTG
AAAGCCTTCAAGAATCAACAGATTCCCGCATCCGCGGAGCTGGAGGAATG
CAGTGCGCCCAGTCACAAGGCCACCTTCTCGGGCTACAACTACGTGATTC
TGCTGGGCATGCTGGTCATCTCGCTGGGCATCGGCATCTTCTATGGCTTC
TTCCAGAAGGGCGGCAGCTCGTCCAACGAGTTCCTGCTGGGCTCCGAGAT
GAGCATCTTCCCGGTGACACTCAGTCTCACGACCAGCTTCATCACGGCCA
TCGAACTGCTGGGAAATCCATCCGAGATGTACTTCCAGGGCACCCAGTTT
GTGCTCATCGTAATACCCATGGTGATTGTCATTCCGGTTGCTGTGAAGAT
CTTCTATCCCATTTACTTTAAATGGAGCTCACCAGCTGCTATGAGTATCT
GGGCATTCGGTTTGGCAAGGAGATCAGGATTCTGGGTGCAGTGCTCTATG
TCATTCAATGTGCTTCTACACGGCTGTGGCAGTCCTGGCACCGGCAATTG
CTCTGTCTAAGCCACGGGACTGGACCCAAATCGCGTGGCCCTGATCTATG
TGGTCTGCGTTTTCTCTCCTC
FMO03006.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:42:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5687-RB | 3115 | CG5687-RB | 765..1552 | 41..821 | 3675 | 98.4 | Plus |
| CG5687-RA | 2752 | CG5687-RA | 402..1189 | 41..821 | 3675 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:42:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 1935613..1936280 | 707..41 | 3215 | 99.1 | Minus |
| 3L | 28110227 | 3L | 1935438..1935549 | 815..708 | 365 | 94.6 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:42:58 has no hits.
FMO03006.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:06:26 Download gff for
FMO03006.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5687-RA | 398..1189 | 33..821 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:02:59 Download gff for
FMO03006.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5687-RA | 398..1189 | 33..821 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:23:29 Download gff for
FMO03006.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5687-RA | 398..1189 | 33..821 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:23:29 Download gff for
FMO03006.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 1935431..1935549 | 708..821 | 94 | <- | Minus |
| 3L | 1935612..1936289 | 29..707 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:02:59 Download gff for
FMO03006.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 1935431..1935549 | 708..821 | 94 | <- | Minus |
| arm_3L | 1935612..1936289 | 29..707 | 98 | <- | Minus |
