FMO03007.5prime Sequence
1284 bp (991 high quality bases) assembled on 2008-07-09
> FMO03007.5prime
TTCGTATAGCATACATTAAACGAAGTTATCAGTCGACATGACCTCGCGAA
TGTTCAAGTTCGGCGTAACAGCCGCTAGCGCCTGTGTTGGTTCCGTCCTG
GCCTCGTACACCCTGGATCGCTGGAACACCCCCCATGTGGTTAACAATGC
CACCGTGCCGCCGAAAAGGAAGCGCACGCTGCCCCCGCGAGCGGATCAGA
TCAAATCCCTGATGAGCGGCGAGGAGTTCGACGTGCTGATCATCGGCGGA
GGAGCCACGGGAGCTGGATGTGCTCTCGACTCGGTTACAAGGGGTCTTAA
GACCGCCCTGGTGGAGCTGGATGACTTTGCCAGCGGAACTTCCTCGAGAT
CCACGAAACTTATCCATGGCGGAGTGCGATATCTGCAGAAGGCCATTTTG
GGCCTAGATCTAGAGCAGTACCGCATGGTGAAGGAGGCGCTGGCTGAGCG
CGCCACCATGCTCGAATCGGCGCCCCACTTGACCCACCCTCTGCCCATCA
TGCTGCCAGTTTACACATGGTGGCAGGTTCCTTACTACTGGGTGGGCATC
AAGGCCTACGATCTGGTGGCCGGCGATCGCAATGTGAAAAGCTCGTACTA
CCTCTCCAAGAAGGATGCCCTCGAACTGTTCCCCATGCTCAAGAAGGACA
AGCTGTGCGGCGCTATCGTCTACTATGATGGCCAGCAGGATGATGCCAGG
ATGTGTCTGGCGGTGGCGCTGACTGCCGCTCGTCACGGTGCCACTGTGTG
CAATCACGTGGAGGTGAAGGAGCTGCTGAAGAAGGACGACGGCACTGGCA
AACAGGTGCTGTGCGGAGCCAAGGTCAAGGACATATCTCCGGCAAGGAGT
TCACCGTGAAGGCCAAGTGCATTGTTAATGCCGCCGGTCCCTTCACGGAC
TCCATCCGCAAGATGGACAACCCCACGGTGAAGAGCATCTGCTGCTCCAG
TTCCGGGAGGTCATATCGTACTCCTGGCTACTATTAGCCCCGATCAGATG
GGTTTGCCTGGATCCCTCCCCTTCCGACGGGCCGCGGTCATTCTTCTTCC
TGCCCTGGCAGAAGGCAGAACGATTGCCGGGCCCCACCGACCTGCCCTGG
CCAAATCCCCCCCATTCCACCGCCCCACCGAGGGAACAAGAATCCAGTTT
ATCCCCCCAACGAGAAGTAAAGAACTATCTGGAATGCGAAATGTGGGAGG
GTGCCTCGTGCATGGTGCCCTCTCCCGCAATGGGAAGCCTATCCCGCGCC
CTCTTGTACTCTTCTCCGTATCCTCCCAAACTAA
FMO03007.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:34:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gpo-1-RD | 2637 | CG8256-RD | 332..1469 | 34..1188 | 5080 | 97 | Plus |
| Gpo-1-RA | 2433 | CG8256-RA | 128..1265 | 34..1188 | 5080 | 97 | Plus |
| Gpo-1-RB | 2492 | CG8256-RB | 187..1324 | 34..1188 | 5080 | 97 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:34:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 15859339..15859939 | 1125..517 | 2305 | 96.4 | Minus |
| 2R | 25286936 | 2R | 15860375..15860531 | 295..139 | 785 | 100 | Minus |
| 2R | 25286936 | 2R | 15860007..15860119 | 516..404 | 565 | 100 | Minus |
| 2R | 25286936 | 2R | 15860195..15860305 | 403..293 | 555 | 100 | Minus |
| 2R | 25286936 | 2R | 15860599..15860706 | 141..34 | 525 | 99.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:34:35 has no hits.
FMO03007.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:06:28 Download gff for
FMO03007.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)k05713-RA | 350..1509 | 24..1204 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:05:03 Download gff for
FMO03007.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gpo-1-RB | 178..1337 | 24..1204 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:18:43 Download gff for
FMO03007.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gpo-1-RB | 178..1337 | 24..1204 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:18:43 Download gff for
FMO03007.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 15860601..15860713 | 24..139 | 95 | | Minus |
| 2R | 15859272..15859939 | 517..1204 | 94 | <- | Minus |
| 2R | 15860007..15860119 | 404..516 | 100 | <- | Minus |
| 2R | 15860195..15860304 | 294..403 | 100 | <- | Minus |
| 2R | 15860377..15860530 | 140..293 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:05:03 Download gff for
FMO03007.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 11746777..11747444 | 517..1204 | 94 | <- | Minus |
| arm_2R | 11747512..11747624 | 404..516 | 100 | <- | Minus |
| arm_2R | 11747700..11747809 | 294..403 | 100 | <- | Minus |
| arm_2R | 11747882..11748035 | 140..293 | 100 | <- | Minus |
| arm_2R | 11748106..11748218 | 24..139 | 95 | | Minus |
