FMO03008.5prime Sequence
711 bp (711 high quality bases) assembled on 2008-07-09
> FMO03008.5prime
CAGGCCAGCTTAATAAATTCTTTTAAATTAATATTACTTAAAATAATACT
AACAAACAAAACTTCTGCACTAGGGGGGACTGAGGACCATACTTCGTATG
CATAATATACGAAGTTATCAGTCGACATGATACTTTCGCGCGGAAAAACC
GACTCGGCGAGCTCGAGAAATGCCAGCGGAGGTCCTGGCTGTGGGCTCGG
CGTTGGAAGGCAGGCAAGGAAGACTCCGGCACCGGCCTCCCTAGAGGATT
TCATCATCAGGCGGGACTACACGGGAGCCCGGGCTTTTCTGGAGTTCGCC
AACGACGACGAGGACGAGGAGGAGGGTGCTCATGGATCCAAGCAGAGTCA
GGTGGATCAGTGGATTGCCTTTTGCAATTTCCATTTGGGTGACTACCAAC
AGGCGCTGGCCCAATACAAGGCCATACAGCAGGGTTCGTCAACTCCTGAT
GGGAAATTGGATCTCAACCTGGCCGTGTGTATGTTCTACTTGGGCTTGTA
CGAGGAGGCCCAACAACTGATGGCCAATGCGGCTGACAATCCGCTGAAGC
AGCGACTCCTCTTCCACTTGGCCCACAAGCTGGGCAACGAGGAGGAGTGG
AGCCAGCTGCAGGAGGAGCTGCAGGATTCCTCGAGCTTGGAACAGCAGCT
CAGCCTGGCTTCGATGCACTACATGCGGGCCCATTACCAGGAGGCCATCG
ATGTGTACAAA
FMO03008.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:52:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4525-RA | 1881 | CG4525-RA | 81..665 | 127..711 | 2895 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:52:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15775885..15776303 | 293..711 | 2095 | 100 | Plus |
| 3R | 32079331 | 3R | 15774559..15774724 | 129..294 | 800 | 98.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:52:38 has no hits.
FMO03008.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:04:40 Download gff for
FMO03008.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4525-RA | 122..703 | 127..708 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:24:33 Download gff for
FMO03008.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4525-RA | 122..703 | 127..708 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:39:52 Download gff for
FMO03008.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4525-RA | 81..662 | 127..708 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:39:52 Download gff for
FMO03008.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15774559..15774724 | 129..294 | 98 | -> | Plus |
| 3R | 15775887..15776300 | 295..708 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:24:33 Download gff for
FMO03008.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11600281..11600446 | 129..294 | 98 | -> | Plus |
| arm_3R | 11601609..11602022 | 295..708 | 100 | | Plus |
