FMO03012.5prime Sequence
1253 bp (933 high quality bases) assembled on 2008-07-09
> FMO03012.5prime
TCGTATAGCATACATAATACGAAGTTATCAGTCGACATGGAGTTCCTTAG
CGCCCAGTGCGCTGCCCGTTCGGCGGGTCCGGCAAATACGCTGATGTCCT
TGCTCCTGTCCACGCTGATTACCAAGTACTGCGATTTGAGCGGACAAAAT
CAATGGCCAGAGGACAAGGGCGATTGGCTGGAACAGGCTGGTGGCTTCAA
GCATGACTACGACTTTATTGTGATTGGATCGGGTACATCGGGCGCAGTGG
TTGCTGGTCGTCTGGCCGAGGTAAAGAACTGGAAAGTGCTGCTCCTGGAG
GCCGGTGGTGATCCACCAATTGAGACGGAGTTCGTTGCCTGGCACATGGC
CACCCAATTCTCCGAATGGGATTGGCAATACCACTCGAAACCGAACGGAC
GTGCGTGCATGGCGATGAAGGGCGAAAGTTGCCACTGGCCGAGGGGCAAA
ATGTTGGGCGGCACGAATGGAATGAATGCCATGATCTATGCCAGAGGAAC
GCGTAAGGATTTCGATGACTGGGAAGAGAGGGGCAATCCCGGATGGGGCT
ACGATGAGGTGCTGAAACACTTCCGCAAGGCCGAGGATCTGCGTTCCACG
CGACCGGACTACAAGCCCGGCGATCATGGCGTCGGTGGACCAATGGGACT
GAACAATTATGTATCCGACAACGAATTCCGCACTACCATACGCGCCGGCA
TGCAAGAGATGGGCTACGGCAGTGCTCCGGACTTTACCGAAGGCTCGTTT
GTGGGTCAAATGGACATCTTGGGCACTCAAGATGGTGGTCGTCGTATCAC
CCACCGCCCGATCTCATCTGAAGAAGAATACGCCCCATCTGCCACATCCC
TGCGACATGCTCACGTGCAAGAAGATCAATCTGGGATCGTACCCATCAGA
GCCGAAAGTGTGACCTTTGGTGCATCGCGGCAAGAATGAGTACCCCGGTG
AAAGCCAGTAAGGAGGTCATCGTGTCCGCCGGTGCCATTGGTTCACCTCA
GAATCTTGTTGCTTTCAGGCATCGGTCCCGCGATCACTTGAGAGCCTGGG
AATTAGCGTGAAACTGGACTTTCCGGTGGGTGGAAAACCTCAAGGATCAC
GCCAGTCTGGCGATGATACTTTCCGAATCGACCAAGTCAACTGTCCTCCA
AACCAACCGGAAGGAGGAAGCTTACTGAATGCAGTTCAAATCTGGCCGTA
ATGTTCGCTTTATGTTAAAACGTGTGTTGTTCACCACTCAGAAGGACATC
ACT
FMO03012.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:26:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9512-RB | 2221 | CG9512-RB | 149..1266 | 37..1168 | 4940 | 96.7 | Plus |
| CG9512-RA | 2113 | CG9512-RA | 149..1266 | 37..1168 | 4940 | 96.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:26:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 14903963..14904936 | 1019..37 | 4330 | 98.2 | Minus |
| X | 23542271 | X | 14902844..14902947 | 1117..1015 | 285 | 91.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:26:25 has no hits.
FMO03012.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:00:18 Download gff for
FMO03012.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9512-RA | 118..1220 | 29..1143 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:02:33 Download gff for
FMO03012.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9512-RA | 142..1244 | 29..1143 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:14:29 Download gff for
FMO03012.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9512-RA | 142..1244 | 29..1143 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:14:29 Download gff for
FMO03012.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 14903964..14904940 | 29..1018 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:02:33 Download gff for
FMO03012.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 14797997..14798973 | 29..1018 | 97 | | Minus |
