FMO03015.5prime Sequence
1239 bp (1004 high quality bases) assembled on 2008-07-09
> FMO03015.5prime
GTATAGCATACATTATACGAAGTTATCAGTCGACATGGCCAACAACAACT
ACGCCGGGTTTAACTACGGCGGCACCCAGTACAATACGGGCCAAGTCTCG
TACCCGGCGGTAACCAATGCCACCTACGCGAATGCGGCCGCCTATCAGAA
TGCCGCTGTGGCCGCCGGACAGGGTGGTTATGGCGGAGCAGCAGGAGCGG
GCGCTGGCGCCACCTCTGGCCCTGGGGCGGGGGGTTATGGTGGCTACGGC
GACTATCGAAGTGCCATGCAATACGACGCCACCAAGACATTCTATCAGCA
GTCGCCGGCCAGCTACAACGCCTCCGGTTCGACAGCCTCGGTCAGCAAGA
CGCACTACTCGGCTCCGCCAGTCAAGAATCAGGTCAAGGGCAAGATGGAC
AAGTCGAACGGTGGTCCCAAGCCCCCTAGTTCGGCTCCTCCGGCGGGCAA
CAATTACAGTGGCTATGATACAGCACTCTACAATGCGGCAAGCATGTATG
TGGCCCAACAGCATCAGGGCAATCCAAACCAAAAACCAAATGGCGGCGCC
AATAACTGGTATCAGCGTAAGATGGGAGCCACCATACCAGGAGCAACGGC
CATAAGGGGTATGCGTCCGAAGGCACCTCCACGTCCCCAGCAGCTGCACT
ACTGCGAAGTGTGCAAAATCTCGTGCGCCGGGCCGCAGACTTATCGCGAG
CATCTGGAGGGTCAGAAGCATAAGAAACGCGAGGCTTCGCTGAAGATGTC
CGCTAGTGCCAACAGTGCTACACAAAATCGTGGTAACAACTACCACTGCG
AGCTGTGCGATGTAACATGCACTGGTACGGACGCATATGCCGCCCATGTA
CGCGGAGCCAAGCATCAGAAAGGTGGTCAAGTTGCACCAGAACTGGGCAA
ACCCATTCCCTCTCAAGGAGCCCAAAAAGATGGGCAAGATCGACTTTGTG
CCCCGCTGCTGCTGGCGGAGCTGGTTGTTGCCAGACCGAAGTTGGCCCCG
AACGATAGGCGATGCAGCTGGAGATCTCGATGATTATCTTGGACGATTCC
GCTGGGCGAAAACCCGGACCAACTTAAGCCAGTTAGGCGGCGAGTTAATT
GGAAAGGTCAGGACGAAAGGCCAGATTTGAACCTTTATTGCAAGCCTGTG
GCAATGTGTAGTTCACAGACCGAATGCCATAGACGTGCATGTAGGTCGGC
CATGCTGTGCAGTTACAGTGTCTATAGTGATGTCATATC
FMO03015.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:52:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Zn72D-RD | 3240 | CG5215-RD | 226..1377 | 35..1190 | 4945 | 96.2 | Plus |
| Zn72D-RC | 3106 | CG5215-RC | 92..1243 | 35..1190 | 4945 | 96.2 | Plus |
| Zn72D-RF | 3423 | CG5215-RF | 409..1560 | 35..1190 | 4945 | 96.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:52:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16110801..16111869 | 1110..35 | 4635 | 97.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:52:06 has no hits.
FMO03015.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:00:22 Download gff for
FMO03015.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Zn72D-RB | 166..1247 | 31..1117 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:24:11 Download gff for
FMO03015.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Zn72D-RF | 404..1485 | 31..1117 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:39:30 Download gff for
FMO03015.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Zn72D-RF | 404..1485 | 31..1117 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:39:30 Download gff for
FMO03015.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16110793..16111870 | 35..1117 | 97 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:24:11 Download gff for
FMO03015.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16103893..16104970 | 35..1117 | 97 | -> | Minus |
