FMO03016.5prime Sequence
1228 bp (1009 high quality bases) assembled on 2008-07-09
> FMO03016.5prime
ATAGCATACCTTAAACGAAGTTATCAGTCGACATGTTCGGAAAAACTCGT
CAGTTGCTATTCAGCGTTTGCATTCGGTCCCCGGTGTGCCGACGATATGT
CCCGAAGTTCATCAAGCGTTCATACGCCTCGCAGGCGGTTAACCAGATGC
TGCTGCTCCAGCAGATGGACATCTGTGCGGATCAGCCGTCGCGAGCCTTG
GTCATAGGCGTCTATGCGGATGAGGAGGACAAGAACGATGCCGGCATTCT
GACCCCCGCCGGCTGGCGTTATAATCTTCAAAAGACAAATGGTCGTCTGA
TAGAGGTGCTCCGGATGTCGGGACCCATGCCCAAGAGAGGCGAGGCCCGT
CTTCTCTTCGCCGTTGAGCCGGAGCGTATTCCCTATTATTCTGTGGTGGC
GGTCGTTGGTCTGGGTAAGGAGTGCTTGGGCTATAATCCCTATGAGGTCC
TGGACGAACAGAAGGAGGCTATCCGAAGGTCGGTGGCCGCTGCCTGTAGG
ATTCTCGCCGAGTTGGATACCGATCGTATTGAGGTGGAGAACTGCGGACA
CGCCGAATCGGCTGCCGAAGGTGCCGCCTTGGGTATCTGGTTGTACCAGG
AATTGCGCGATCCCAAGACCCGAATCTTTGTTCCGGCCATCGATTTGTAC
GCCACCAAGGACGAGGTCTGCGACATAGAAGGATGGCGCATTGGGCTGCA
AAAGGCTGCCGCGCAGAACCTGACCCGCCAGTTGCAGGAGATGCCCTCCA
ACCTTTTGACCCCCACTGCCTTTGCCCAGAATGTCGTCGAAGTGCTCTGT
AAGTCCGGCGTCAATGTAGAGGTCAAAGTCGAGGGTTGGGCTGAGAGCCA
GTCGATGCACGCCTTCTTGGCGGTGGGAAAGGCCTCTTGCGAACCACCAA
TCTTCCTGGAGCTGAGCTACTACGGCACCTGCGCCGGAGGAGAGACCCAT
CGTACATGAATGGGAAAGGCCATCACTACGATGCTGGCGGTCTGTGCCTG
AAGAAAAGAAGGGCTCTTCAACATGCGCGGGCGACTGACTGGACGGCTGT
TGGGTGGTGGCCACATGTCGGGCGTGCTGGACTAAATGCTTGTTCAATAT
CGAGGCTTATTCCTCGTGGGCAAAACGTGCTGGCCGCACTCTCGAAACAG
GGTGAACTGTCAGTCATGGATGCAGAACTTTGGGAGGGGCATTCCGGATT
CAGAGAGAAGTGTCTTGGTTCGGGGCCG
FMO03016.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:28:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| S-Lap1-RA | 2121 | CG6372-RA | 203..1302 | 33..1128 | 4900 | 97.3 | Plus |
| S-Lap2-RA | 2093 | CG32351-RA | 338..1284 | 123..1070 | 2325 | 83.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:28:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8617437..8618476 | 33..1073 | 4650 | 97.9 | Plus |
| 3L | 28110227 | 3L | 8620225..8621054 | 123..953 | 2290 | 85.3 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:28:45 has no hits.
FMO03016.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:01:57 Download gff for
FMO03016.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6372-RA | 199..1254 | 30..1083 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:03:16 Download gff for
FMO03016.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| S-Lap1-RA | 199..1254 | 30..1083 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:15:42 Download gff for
FMO03016.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| S-Lap1-RA | 199..1254 | 30..1083 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:15:42 Download gff for
FMO03016.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8617433..8618488 | 30..1083 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:03:16 Download gff for
FMO03016.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8610533..8611588 | 30..1083 | 98 | | Plus |
