FMO03017.5prime Sequence
1238 bp (1010 high quality bases) assembled on 2008-07-09
> FMO03017.5prime
TATAGCATACATTAAACGAAGTTATCAGTCGACATGGACCAGCCCGACGA
CCATTTCCGCTACATACACAGCTCCTCGCTCCACGAGCGAGTGCAAATCA
AGGTAGGGACGCTCGAGGGGAAAAAGCGCCAGCCGGACTATGAGAAACTG
CTAGAGGATCCGATCCTGAGATTCTCGGGCCTGTACTCCGAGGAGCACCC
CTCGTTCCAGGTGCGCCTGCAGGTGTTCAACCAGGGCAGACCCTACTGCC
TCCCAGTGACCAGCTCCTACAAGGCGTTCGGCAAGCGATGGAGCTGGAAC
GAGTGGGTGACGCTGCCGCTGCAATTCTCCGACCTGCCCAGAAGCGCCAT
GCTGGTGCTGACCATCCTGGACTGCTCGGGCGCGGGCCAGACCACGGTCA
TTGGAGGCACCTCCATCTCAATGTTCGGCAAGGACGGCATGTTCCGCCAG
GGAATGTACGACTTGCGAGTGTGGCTGGGGGTCGAGGGCGATGGCAACTT
TCCCAGTCGCACGCCCGGCAAGGGCAAGGAGTCGTCCAAGTCGCAGATGC
AGCGCCTAGGAAAGCTGGCCAAGAAACACAGGAACGGCCAGGTGCAAAAG
GTGGACTGGCTGGACAGACTGACGTTTCGCGAAATCGAGGTGATCAACGA
GCGCGAAAAGCGTATGTCGGACTATATGTTTCTTATGATCGAGTTTCCCG
CCATCGTGGTGGATGACATGTACAACTACGCCGTGGTCTACTTCGAGCCG
GAGGGTGACGTCAAATACAAGCTGCCGGCCAAACCTAAGCTGGTTTCTGT
GCCGGACTCCGAGATCCAAATGGAAAATCTGGTCGAGCGCAAGCACCATC
GATTGGCCCGTTCGGAGCGTTCAGGCATCTCGGACAGAGATGCCAAGCCG
ACAGCCAGCATTCGCGATCAGCTCCACACGATTGTCTATAGGTATCCACC
CACCTATGTTCTGAGCAGCGACGAGCAGGATCTGGTGTGGAAGTTTCGCT
TTTATCCCCTCCTCGCACAAGAGGCTCTGACCAGTTCCTCAGTGCATCAA
TTGAAGCTGAAGACGAGTACGCAAGACCATTGGATGCTGGCCAACTGGGC
GCCCATGAACGTGAGGAATGCCCTTGGACTTGCTGATCCCAACTTTACGC
ACCCGCCAGTGCCAAAGTCGCGTATGTATGGCCAGCCCACGACAGAGAAT
CGCGCGGCCTACAATGCTTTAACCATGTGGGTGCAAGG
FMO03017.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:44:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pi3K59F-RA | 3164 | CG5373-RA | 82..1222 | 34..1168 | 5190 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:44:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23560719..23561340 | 105..726 | 3110 | 100 | Plus |
| 2R | 25286936 | 2R | 23561398..23561579 | 727..908 | 910 | 100 | Plus |
| 2R | 25286936 | 2R | 23561632..23561900 | 906..1168 | 605 | 89.3 | Plus |
| 2R | 25286936 | 2R | 23560573..23560643 | 34..104 | 355 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:44:22 has no hits.
FMO03017.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:00:24 Download gff for
FMO03017.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pi3K59F-RA | 73..1224 | 26..1171 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:03:32 Download gff for
FMO03017.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pi3K59F-RA | 75..1226 | 26..1171 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:24:23 Download gff for
FMO03017.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pi3K59F-RA | 75..1226 | 26..1171 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:24:23 Download gff for
FMO03017.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23560566..23560643 | 30..104 | 94 | -> | Plus |
| 2R | 23560719..23561340 | 105..726 | 100 | -> | Plus |
| 2R | 23561398..23561579 | 727..908 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:03:32 Download gff for
FMO03017.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19448089..19448166 | 30..104 | 94 | -> | Plus |
| arm_2R | 19448242..19448863 | 105..726 | 100 | -> | Plus |
| arm_2R | 19448921..19449102 | 727..908 | 100 | -> | Plus |
