FMO03021.5prime Sequence
1285 bp (991 high quality bases) assembled on 2008-07-09
> FMO03021.5prime
ACTTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGCGGATACG
CGAAAAACGCAAGTTGCAGAGGGAGCTGAGGGTGGAGAAGCGCGTGGAGA
GGGAGAAAAAGGAGCACAAGGAGGCCTCCAAGACGCAGGACAACAACAAC
AAGGCGAAGGCCACTGACACGGAGGTTCTCACACCAGCTCCTGCGCCTGC
GCCTGCTCCACCAGCAGCACCCACTTCGACTGCATCACCCACACCCACTA
GCACGCACACCCCCAGCCTGCCGGCCGCCGAGAAGGTGGCCTTCGACAAT
CGCATCAAGCGCAAGAATGTCCTGGCCCTCAACGAAAAGGTTGCTGCTCT
GCGGGAATACGATCGGCTGCCGGTTTATAAGCACGTTGGCCGGCTGTTCA
ACTGCAGCCCAGATCAGATCAAGCGGATCGTGCAGCAGCGCGCTGAGATT
CTGAACGCGTGGGATCAGCGAACCCGCAGGAGCCAGGACGCCAAGACCAT
GGAGACGAAGACCGTCAGGGTCTCGATGTTGGGCAAGGCCGTGTACGATT
GGATACGCCGCATGATGTACTACAAGGACTTCAGCATCTCCGACGGACTC
ATCCAGAAGATGGCGCTGCAGTTCAAGAGCTCCATGAACCTGGCACATTT
CTTTCCGCACCAGGAGTGGTGCGACAAGTTCAGACGCACCTACAGCATCC
AACACAGCGACACCAGACTGTTGAAGATAGGCTACACGCAGGGCTACTCG
GTGCAGATCAAGGACATCGTCAAGGACGTCATGTCGGAAAGCATGCCGGA
AAGTGGGCCACGGAACGGCGAGGAGGATGACGAAGAGGTCAGCTTGGGCA
GCCCGGTGAGCAGCCATCCCCGCAGCTATGTAGAAAAGAGGATGACGAGT
GGATGTCGACGGTGGCGGTATTAGCGGCGAGGATGATCTGGATGAAGGAG
CCTGATGTCCAGCCCTCACTAAGCGAACTAAATTTTGCCAGGGCTCCTGA
AGCCCTTGCCGCCTTCTAGTTAAGACTGCCCCCTCCAGCTAACCCACCGC
CCAGGCAACCACCTCAAAAAGTTCTCCTTGCCCACCCCCATTGTTTCGAA
CGCCAGCCGGGCGGGACAGCCCATGAACCATGAACCATCTTACCACTAGC
CACTCTTTGCCTCATAACATTCACTAAGATTCCCTGCCCTCACGAGTCAT
CTGACTAGTAACCGTGTGTTACCCGCCTGCCCTTCCACTCTAAATACAAC
CGGAAAAGAGGATATCTAATGAGTGGACACCCCCA
FMO03021.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:16:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ebd1-RA | 2329 | CG3371-RA | 403..1537 | 40..1189 | 5030 | 97 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:16:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 683802..684693 | 1051..158 | 4075 | 98.5 | Minus |
| 3L | 28110227 | 3L | 685027..685147 | 160..40 | 605 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:16:27 has no hits.
FMO03021.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:04:43 Download gff for
FMO03021.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3371-RA | 393..1510 | 32..1164 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:42:36 Download gff for
FMO03021.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ebd1-RA | 397..1514 | 32..1164 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:00:13 Download gff for
FMO03021.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ebd1-RA | 397..1514 | 32..1164 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:00:13 Download gff for
FMO03021.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 683700..684691 | 160..1164 | 97 | <- | Minus |
| 3L | 685028..685153 | 32..159 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:42:36 Download gff for
FMO03021.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 685028..685153 | 32..159 | 96 | | Minus |
| arm_3L | 683700..684691 | 160..1164 | 97 | <- | Minus |
