FMO03022.5prime Sequence
1224 bp (990 high quality bases) assembled on 2008-07-09
> FMO03022.5prime
CGTATAGCATACATTATACGAAGTTATCAGTCGACATGAGTGCCAGCAAC
AAAGGCGGTTACAAGACGCCGCGGAAGGAGAACCTCATGTCCATTGAGAA
CCTCACCAATTCGGAGGAGGAATCCGAGGACTTGAACACGGCAATGGTTG
GGAATGCAGTGGAATCTCAGCCCAAGGTCACCAGTCGGCGTTCCACCCGA
CGTCCAAGTCCCACCAAGAAATACCAGGCGTACCAGAAGGAAAGCAATGG
AAAAGGCCAGGAAGAGCGAATTGTTGTGAACTATGTGGAAATGTCCGATG
AACGGAGCAGCGATGCGGAGGATCAGGAAGAAGAAGAAAGCATCGAGGAG
TCGGAAAATGCTGCCCGTCCCGCTGCCAAGGATCTGCATCTCATCCAATC
CGAGTACAATGTGGCCGGCACCAGCATGTTTGGCTTCAATACGCCCAAGA
AACGCGATGCCATGGCACTGGCCGCCCTAAATGCCACGCCCTGCACGCCC
AAGACCCCAAAAACGCCGCGTTTGGGTGTCAAGACGCCGGATACGAAGCG
CAAGAAGTCCATGGATCAGCCAAAGACTCCCGCCCATGTGCGCACCCGCG
TCAAGAAGCAGATTGCCAAAATAGTGGCCGACTCAGATGAGGATTTTTCT
GGAGATGAAAGCGATTTCCGGCCCAGTGACGAGGAATCCTCCTCCAGCAG
CAGTAGCAGCGATGCTGGCAACTCCTCTGACAACGACGCCGCCGATGATG
AGCCCAAAACGCCCAGTAGAGCCCGCCGTGCCATTGTAGTCCCCGTTCTG
CCGAAACTCCATCGGCAGCCCGCCTGCGACAATCGGCGAGGGCGAAAAAA
TCGAATGATTTGTGCCCGAGAGCGATGGTTACTTTCACTCGCATGCCAGA
GCAGATCCTCACTTCGGATCACACCTTGGATCGCCTAAAGAATCCTTCGC
CTGGCCGCCGATCGTGTTTTCAGTTTGCTGTCGAAATCAGACAATCGCGG
AGCATGAGGGTTCTATTAATGCCATTATGGAGAGTATCGATCGTACTTTC
CCAGTGATGTGATTCTGACGAGCTTCATATACTTTCTATATGGATGGCTC
AAGCACCAGCTGCTGCAGTCATTCAATCGGAAGTTTGCATAAAGCAACGA
AATTGAGGTATGCTCTATCCAGCTGACCACTCAGAATGCCTGAATACCCT
ACCACAGAGGGCACCCAATATGTA
FMO03022.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:59:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Orc2-RA | 1995 | CG3041-RA | 65..1189 | 35..1142 | 5070 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:59:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 13965007..13965581 | 35..609 | 2875 | 100 | Plus |
| 3R | 32079331 | 3R | 13965650..13966099 | 610..1053 | 1810 | 97.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:59:56 has no hits.
FMO03022.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:01:55 Download gff for
FMO03022.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Orc2-RA | 28..1161 | 29..1147 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:12:10 Download gff for
FMO03022.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Orc2-RA | 60..1193 | 29..1147 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:46:41 Download gff for
FMO03022.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Orc2-RA | 60..1193 | 29..1147 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:46:41 Download gff for
FMO03022.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 13965002..13965581 | 29..609 | 99 | -> | Plus |
| 3R | 13965650..13966203 | 610..1147 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:12:10 Download gff for
FMO03022.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 9790724..9791303 | 29..609 | 99 | -> | Plus |
| arm_3R | 9791372..9791925 | 610..1147 | 95 | | Plus |
