FMO03023.5prime Sequence
1232 bp (984 high quality bases) assembled on 2008-07-09
> FMO03023.5prime
GTATAGCATACATTATACGAAGTTATCAGTCGACATGAATAAGAACCTCG
GCTTTGTGGAGCGCTTGCGGTGGCGCCTCAAAACCATCGAGCATAAAGTC
CAGCAGTATCGCCAGTCGACCAATGAAACAGTTGTCGCCGACACGGAGTA
CGGCCAAGTGAGGGGTATCAAGCGTCTATCTCTCTACGATGTGCCCTACT
TCAGCTTCGAGGGTATCCCGTACGCCCAGCCTCCGGTGGGGGAGTTGCGG
TTTAAGGCCCCTCAGAGGCCCATTCCCTGGGAGCGAGTTCGCGACTGCAG
CCAGCCGAAGGATAAGGCCGTCCAGGTGCAGTTCGTCTTCGATAAGGTAG
AGGGCTCCGAGGACTGCCTCTATCTCAATGTGTACACCAACAATGTGAAG
CCCGACAAGGCTCGCCCGGTTATGGTTTGGATTCACGGAGGAGGCTTCAT
TATCGGCGAGGCCAATCGGGAATGGTATGGCCCGGATTACTTTATGAAAG
AAGATGTTGTTCTCGTCACGATACAGTACCGACTTGGGGCTTTGGGATTT
ATGAGTCTTAAGTCCCCCGAGCTAAATGTACCAGGAAATGCTGGCCTCAA
GGATCAGGTGCTGGCCCTCAAGTGGATCAAGAACAATTGCGCTAGTTTCG
GCGGAGATCCCAACTGCATCACTGTTTTTGGAGAGAGTGCTGGAGGCGCC
TCCACTCACTACATGATGCTAACCGATCAGACCCAAGGGCTCTTTCATCG
CGGCATCTTGCAGTCGGGCAGTGCCATTTGTCCTTGGGCCTACAACGGCG
ACATTACCCATAATCCCTACAGGATAGCCAAGCTGGTTGGCTACAAGGGC
GAGGACAACGACAAGGATGTGCTGGAGTTCTTGCAGAACGTAAAGGCCAA
GGATCTTATTCGCGGTGAGGAAAATGTCCTGACCCTGAAGACGCATGAAC
ACATATGTTTGCCTTTGCCCATCCCTGAAACAATCTCCACGCCCGAATGT
GTGATATCAAGCCTCCAAAGGAGATGATGAAGACGCCTGGAGTAACTCAT
CCCATGTTTATAGGAAACACTTCGTACGAGGGCCTGTCTGGATTCCAAAG
GTAAGCTTATGCCGAGGGCTGCAACAACCTGATGCTGTCACCGTTCATTC
AGAATGCTGCCCGGACCATAAGAAACTGGAATCTGATGCCAATTCCAAGT
TCATCGCACATGTGCTCCAAAGACCACCCCCC
FMO03023.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:10:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| alpha-Est7-RA | 2017 | CG1112-RA | 107..1231 | 31..1141 | 5060 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:10:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 7520525..7521076 | 1086..545 | 2200 | 96.2 | Minus |
| 3R | 32079331 | 3R | 7521366..7521682 | 398..82 | 1585 | 100 | Minus |
| 3R | 32079331 | 3R | 7521133..7521284 | 546..395 | 760 | 100 | Minus |
| 3R | 32079331 | 3R | 7523597..7523647 | 81..31 | 240 | 98 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:10:25 has no hits.
FMO03023.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:06:30 Download gff for
FMO03023.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| alpha-Est7-RA | 102..1228 | 26..1137 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:15:13 Download gff for
FMO03023.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| alpha-Est7-RA | 101..1227 | 26..1137 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:49:59 Download gff for
FMO03023.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| alpha-Est7-RA | 101..1227 | 26..1137 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:49:59 Download gff for
FMO03023.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 7520525..7521075 | 546..1086 | 96 | <- | Minus |
| 3R | 7521134..7521284 | 395..545 | 100 | <- | Minus |
| 3R | 7521370..7521682 | 82..394 | 100 | <- | Minus |
| 3R | 7523597..7523653 | 26..81 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:15:13 Download gff for
FMO03023.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 3346247..3346797 | 546..1086 | 96 | <- | Minus |
| arm_3R | 3346856..3347006 | 395..545 | 100 | <- | Minus |
| arm_3R | 3347092..3347404 | 82..394 | 100 | <- | Minus |
| arm_3R | 3349319..3349375 | 26..81 | 94 | | Minus |
