FMO03024.5prime Sequence
1256 bp (1046 high quality bases) assembled on 2008-07-09
> FMO03024.5prime
TTCGTATAGCATAAAAAGACGAAGTTATCAGTCGACATGTTTTCCACCAC
CACACACTCCGTGCCCTACCTGTACCTAGGCAACTTCAGCAGAAAGCCGC
ACTACTACTCCGTTAATCGAACCAAGCTGCACGGGAGCGCGGGAGCTGCC
CGGTTGTCCAAGTCCACGTCCACGTCCAGCCGGAGTCATGACCTAGTGCT
CGACCTGCGGAACCTGCTGAGCCGTTCGAGCGCCAGTATACAGGGCATGG
TGGAGAGGGCGGCTCGACTGAATGGCATTCTCGACCGGCGGCTGGTCGAT
GATGTGCTGGCCAAGGTGACGAGCATGCTGCCCTCCATGCGCGATGTCCG
AGTCACGTTGGAGGAGTCGGCCACACAGATCGGTCGTGTCCAGCTGCAAA
ATTATCAGTTCGAAGTTTCGCTAACCGGTGCAGCAGGTTCCGTGCCCACA
GGCGCCAATGTCAAGGTGATTCCAACTATTACACCAGGTCTTCTTCGTCC
GCTCTTCTCACAACAACAGCTAAATCAGATACGTGGCTTTAAGACGGATC
GTTCCATTGAGGCGGAACAAAAGCGCAATCCCACAATGACCTCCCGACTA
AAGAATGCTCTGGCCAACTCGCCCCAGCGTCTGGATGGGGACACACCCCT
TCAGGCTGAAAAACTGAGACGGCTGCTGGCCAAATCCGAAGAGCATGGAT
TTAATAAAGCCGAGAGCCTGAAAATTGCCTTTGCCGAGGGCTACTTGGCC
GCCGCTAACTCGGAGGACTCTCCAAAATCAGAAAAACTATGAAATATCTG
AAGACTATCGTCGTTATCGTCGTGTTCTTGGGCATTTTCCTGAGCTTCTT
TACAACCTCCAATGGATCCGTATTTCGCATACAACTGGGCAACCAAGGTT
GAAGTGGACCCTGAAGGAGATCAACGCTCACTTTTGAGGATGTCAAGGGT
TGCGACGAAGCCAAGCAAGGAGCTCAAGGGAGGTCGTTGATTCCTGAAGA
GTCCGGAAAAGTTCTCAAATTTGGGGCGGAAAGCTTCCAAAAGGGAAGTG
CTCCTGGTTGGGCCGCCGGGTACTGGCCAAACCACTGCTGGCCCGTGGCG
CGTGCCCCGGTGTGAAGCCTAAGTTCCTTCCTTCCATGCCTGCCGGAACC
GGAGTTCGACGAAGGGCCCGTAAGGCCAAAGGATCGACAAGTGCTGACTG
TCTCAAGGCACACAAGGCCCCTGGTCCCCTGGGTGTTAACTACTCAATGT
GAGAGC
FMO03024.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:46:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3499-RB | 2503 | CG3499-RB | 107..1277 | 37..1220 | 5150 | 96.9 | Plus |
| CG3499-RD | 2940 | CG3499-RD | 306..1485 | 37..1220 | 5050 | 96.2 | Plus |
| CG3499-RC | 2515 | CG3499-RC | 107..1289 | 37..1220 | 5010 | 95.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:46:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 22885414..22885812 | 461..63 | 1995 | 100 | Minus |
| 2R | 25286936 | 2R | 22885053..22885243 | 712..522 | 955 | 100 | Minus |
| 2R | 25286936 | 2R | 22884382..22884662 | 1172..877 | 610 | 90.6 | Minus |
| 2R | 25286936 | 2R | 22884908..22885000 | 803..712 | 415 | 98.9 | Minus |
| 2R | 25286936 | 2R | 22884720..22884795 | 877..802 | 380 | 100 | Minus |
| 2R | 25286936 | 2R | 22885297..22885356 | 521..462 | 300 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:46:20 has no hits.
FMO03024.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:00:21 Download gff for
FMO03024.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3499-RB | 391..1521 | 37..1183 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:04:12 Download gff for
FMO03024.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3499-RB | 107..1237 | 37..1183 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:25:32 Download gff for
FMO03024.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3499-RB | 107..1237 | 37..1183 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:25:32 Download gff for
FMO03024.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 22884373..22884661 | 878..1183 | 91 | <- | Minus |
| 2R | 22884720..22884793 | 804..877 | 100 | <- | Minus |
| 2R | 22884908..22885000 | 712..803 | 98 | <- | Minus |
| 2R | 22885054..22885243 | 522..711 | 100 | <- | Minus |
| 2R | 22885297..22885356 | 462..521 | 100 | <- | Minus |
| 2R | 22885414..22885811 | 64..461 | 100 | <- | Minus |
| 2R | 22885916..22885942 | 37..63 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:04:12 Download gff for
FMO03024.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 18771896..18772184 | 878..1183 | 91 | <- | Minus |
| arm_2R | 18772243..18772316 | 804..877 | 100 | <- | Minus |
| arm_2R | 18772431..18772523 | 712..803 | 98 | <- | Minus |
| arm_2R | 18772577..18772766 | 522..711 | 100 | <- | Minus |
| arm_2R | 18772820..18772879 | 462..521 | 100 | <- | Minus |
| arm_2R | 18772937..18773334 | 64..461 | 100 | <- | Minus |
| arm_2R | 18773439..18773465 | 37..63 | 100 | | Minus |
