FMO03025.5prime Sequence
1248 bp (1020 high quality bases) assembled on 2008-07-09
> FMO03025.5prime
TCGTATAGCATACATTATACGAAGTTATCAGTCGACATGAGCAAGATTCC
AGGCAGCAATCTGGAGTTCGTCCGCGAGGAGGACTTCGTGGAGTACTACA
TCTTTCCCAAGATCCCCGACAACGTACAGGATGAGGGCGCGCTGCGCAAA
CTGATGCTTCAGATCCGCAACGAGATCTCGGCCATTGTAAGGGAAAAGTC
CTTAGAGCGCAGCTATCTGTGGCACAAGGACGAGTTTCAGCTTCAGGTGA
GGCTGGGCGGCGCCGAGGAGCGCCTGCTGAACGAGGAGACAAACCCGGAG
GAGGAGGCGGAACTGGGCGACCTCCCACCGCACTTCCACGGCGTAACCCA
CTATGGCGACAACATCAGCGACGAGTGGTTCGTTGTCTATCTGCTCACGG
AGATCACACGTGCACGCGGCGACTGCATTGCACGGGTGAGCGATTCGGAT
GGCGAGTTCCTGCTCATCGAGGCGGCGGACGCCCTGCCCGACTGGGCGTC
TCCGGAAACGTGCGAGCAGCGCGTTTATCTGGTCGGTGGTCACCTGCAGC
TTCTCCAGAACTCCGCCGCCAGCAGCCAGGACAAGCCACTGACCATGGCC
ATGGCTGTGCAACGTATACGAATGAATCCCACCCTGTACCGCTGCTCGCA
GGAGATACAGTCGTGCATTGACGCGCGGCTTAAGGAGTACCAGATCGCTC
AGCCGCACTTCTCCATTCATCGCCAGGTGCTGGAGCTCCCGCATAGCGCT
GCACAGCTTCTGAAACAGAAGCCAAGGCTGCTCTCCTCGGCGGTTAGGGC
TTTCTGCGAGCGGGACTCGCTGGACATCAAGGCACTTCGCACCATGCGAT
ATTTCCCACCGGAGGCCACACGCGTGCGCACCAACGTGCGTTTCACCCCG
CTGTCTGTACGCCATGTTGTCGCACCAGCAGTATCTGCCCGAGAAGAGAC
TCGGCTGGCATCTCCCGGATCCTGTATCCGAGCCGGAACGATATAGGAAC
AACTATTGGGCTTGAAGCTGGCCAGTGACTGGAGATCCTGGCCCCTCAGC
CAAGCGGTTGAGGGCCCACAGCTGAGGACTTCCTGCCTGGCGAATCGTAT
CTGCGGAGCTTGGCTGAGCAAGGGCTACTTCCGGAACACCCATGAGGCAG
ATGCACGAAGTACAAGAGACTCGTGCTGACCAGCATGGTTATCTTTCGTG
CACATGAGACGATTCCGCCAAGACTCTCAGAGAGGTGTGCGCCGACAT
FMO03025.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:09:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ecd-RA | 2204 | CG5714-RA | 83..1187 | 37..1138 | 5255 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:09:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 2264598..2265423 | 1138..316 | 3635 | 98.4 | Minus |
| 3L | 28110227 | 3L | 2265495..2265775 | 317..37 | 1405 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:09:03 has no hits.
FMO03025.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:01:53 Download gff for
FMO03025.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ecd-RA | 34..1154 | 30..1150 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:14:46 Download gff for
FMO03025.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ecd-RA | 80..1200 | 30..1150 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:49:13 Download gff for
FMO03025.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ecd-RA | 80..1200 | 30..1150 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:49:13 Download gff for
FMO03025.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 2264602..2265422 | 317..1134 | 98 | <- | Minus |
| 3L | 2265496..2265778 | 30..316 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:14:46 Download gff for
FMO03025.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 2264602..2265422 | 317..1134 | 98 | <- | Minus |
| arm_3L | 2265496..2265778 | 30..316 | 98 | | Minus |
