FMO03026.5prime Sequence
1245 bp (970 high quality bases) assembled on 2008-07-09
> FMO03026.5prime
CGTATAGCATACCTTATACGAAGTTATCAGTCGACATGATGAGACAACGG
CTTAGCGTTCTGCTCCTTCTGCTCCACCTTGGCTGTTTAACTTTGGCATG
GGCAAGCAGCAGGCACTTCTGTGGCGACACTTCCGGCCGTGACATCTGCA
ACGATGGCCGCTGGGATGGCCATCAGCGCCAGGACGATTACGATGAGCAC
ATGGTTTACAGACAAGGCGCGGCGGAGAGTCAGAGGAGAGACCGCGTAGA
TTCAGTGGCGCGTGATGATCGCGGCAAGGAAAGGCGCGAGGAAACAAGAG
TTCGGTTGGACTCATCCCTGCGACTTGAGGCTCGTGAAGCTCGCAATGAG
CGACGTGAAACCCGAGAAGAGCGTGTACAGCCACGCGAAACTCGCGAAGT
TCGAGTGGACCGACGTGCAGCTCGTGAAGATCAACTAGATGCTCGCGAAG
CTCGTGATGAGCGACGAGAAGCTCGGGAAGAACGAGTACAGGCACTCGAA
ACTCGTGAAGCTCGAGTGGACCGACGTGAATCTCGTGAAGATCGAGAAGA
CCGACGTGAATCGCGTGCAGATCGAGAAGACCGACGTGAATCTCGTGAAG
ATCGATTGGAGGGTCGGGAAGCTCGCGTCCAACGAGTGGAGCAACGCGAA
GCTCGTGACAATCAAGTTGAGCTCCGTGAAATTCGTGAGATCCGAGAACA
TCGACGTGTAACTCCAGAAGAACGAGTCGAGCAACGCGGCATCCGTGAGG
ACCGTGTTGAGCGACATGAAGCTGACGAAGGACAACGAGATACTCGTAAG
ATGGAGCGACGTGGGGAGCGCGAAATCGGACAGGCGTGACTTCGAAACTC
GGCGACTAGCGGCGAACGAAAGACGAGTTGAACGCCGAGTAGAACGCGAA
ATGTCCAGACGTGAGGAACGCATTAATTCGCCGTGACGATCGAACTAGTC
TAGACATGGAATTTGTCCCGACGTATGGTATCGTGATCAGACTGACCTAG
ATTCTGAAGAACGCAATCGATAGCGACATTCATCGACGAGCAAAGAATCG
ACGTGTTGAACGACGCGAAGAGCGGAAGGAAACCGAGTTCGATTTTGTTT
TTGAAGTTAAGTTGACGAAGTAACACTCTCTCGAACAAGCAGAAGTTCCG
TAAGTAAAAACGGCGAACATTGACCTACGTTACGAAACGGCAAGAGCGAA
ACTCACCTTAGCCTGTGCGGACACTGAATGTAAAGATACTCTTCG
FMO03026.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:41:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12239-RA | 2343 | CG12239-RA | 103..1180 | 36..1120 | 4975 | 97.8 | Plus |
| CG12239-RA | 2343 | CG12239-RA | 390..499 | 434..543 | 295 | 84.5 | Plus |
| CG12239-RA | 2343 | CG12239-RA | 501..610 | 323..432 | 295 | 84.5 | Plus |
| CG12239-RA | 2343 | CG12239-RA | 565..642 | 528..605 | 270 | 89.7 | Plus |
| CG12239-RA | 2343 | CG12239-RA | 595..672 | 498..575 | 270 | 89.7 | Plus |
| CG12239-RA | 2343 | CG12239-RA | 509..612 | 502..605 | 190 | 78.8 | Plus |
| CG12239-RA | 2343 | CG12239-RA | 569..672 | 442..545 | 190 | 78.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:41:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 5792242..5793307 | 36..1109 | 4780 | 97.9 | Plus |
| X | 23542271 | X | 5792529..5792638 | 434..543 | 295 | 84.5 | Plus |
| X | 23542271 | X | 5792640..5792749 | 323..432 | 295 | 84.5 | Plus |
| X | 23542271 | X | 5792704..5792781 | 528..605 | 270 | 89.7 | Plus |
| X | 23542271 | X | 5792734..5792811 | 498..575 | 270 | 89.7 | Plus |
| X | 23542271 | X | 5792648..5792751 | 502..605 | 190 | 78.8 | Plus |
| X | 23542271 | X | 5792708..5792811 | 442..545 | 190 | 78.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:41:15 has no hits.
FMO03026.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:01:58 Download gff for
FMO03026.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12239-RA | 91..1182 | 28..1130 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:46:41 Download gff for
FMO03026.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12239-RA | 98..1189 | 28..1130 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:26:20 Download gff for
FMO03026.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12239-RA | 98..1189 | 28..1130 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:26:20 Download gff for
FMO03026.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 5792237..5793328 | 28..1130 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:46:41 Download gff for
FMO03026.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 5686270..5687361 | 28..1130 | 97 | | Plus |
