FMO03027.5prime Sequence
1271 bp (1003 high quality bases) assembled on 2008-07-09
> FMO03027.5prime
TCGTATAGCATACATTAAACGAAGTTATCAGTCGACATGGCCAAGTACTT
TATAGCCCTGGTGTTGCTGGTGTGTCTGGCCCTGGAGAACAGGAACGTAT
ACAATCGCCTGCACGCCCGCTCCCATCCGAGTTCCCGTGGCGACATCCTT
CGTCCGCATCCTAAGCACCAGCCGCATCCCCATGTGCAGCACACCTCGCA
ACAGCTGCAGCAGCAACACCATATCCGGCAGCAACGATCCCGTCAGCTGA
AACACCTGGAACCGGATCCGACCAGCGAGGAGGACGATGTACCGATCACC
AAGCGGGAGTACTATGCCCGCCTGAGGCGCCACGTCATCCACAAGAGGCA
GCACCTCCTGCAGCAGGAGCTCAGCTACAACCATCCCGGCTCCCATTCGG
AGCAGCTAAAGGTGCCCCGCCTGTGGCAACACCTCATGGAGCAGGAGGAG
AAGGCACACCGACATGTGAGCCCGCCCGTGGAGTTGCCTATCATGTACGG
AGATGCCCCCGAGGAGTCATCCCTCTCCTCCGATGATCACTTTGATGATC
TGTCGCCGCTGGACTTTGTGCGCAACGAACTGATGGCCGAGGACCAGCAG
AATCAGGAGAAGGATCTCGATCTCGATCTGGACCTAGATCAGCAGCCGGA
AACGCCCATAGAGCCAGAGCTCCCATTGGGTGAGAGGAACATCACCATTT
CGGTGAAGTCCAGCGCCGGAGGATGCCCCAAGTGCGAGAGCAATCGCCAA
GTGGAGCACATCACCGAGGAGCAGCTGACCCACTTACGCATCGAGTTCGT
TAAGCAGCAGATCCTGGAGAAGCTGCGCCTCAGGAGAGCCCCAGGGTGTC
GGCCGTGGAGCTGCCCAAGCCCATCTTCGACGGGATGACACTCTCCCATC
CGGACGATAGCACCCGAGAACAAGGAGCTGGACGATTACTACCGCTCGGC
ACTAGCAAGAAGTTCCTACTGCTTCAATAAGAGAAGGAGGTCGAGTGCAA
CCGAGCGAGAGATGGGAAAATCCAATTCCGTCCAATGTTGCCTTCACCTT
TCAAGAATAGAACGACGCAAAATGCCGAGGGCTTCGAACGTGGAGCACCG
GCCGTTCTGTGTGCTCTTTCAAGAAACAACCAAACCGCCACCCAGACACT
GGCATTCGGGTGAACCGCCACACAGTGCCCAGCGACAGATCTGGTATTCT
CTGAAAGTGTGACGAGTGGAATCTACCGATAGGCACCTCAGGATTATTTT
TGTTTCTGGCGGCGGCCACAA
FMO03027.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:47:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| daw-RC | 3050 | CG16987-RC | 673..1792 | 37..1183 | 4875 | 96.7 | Plus |
| daw-RA | 2693 | CG16987-RA | 547..1666 | 37..1183 | 4875 | 96.7 | Plus |
| daw-RB | 2819 | CG16987-RB | 673..1792 | 37..1183 | 4875 | 96.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:47:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2809311..2810245 | 37..973 | 4445 | 99.3 | Plus |
Blast to na_te.dros performed 2014-11-28 22:47:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6924 | 167..376 | 173 | 57.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6746..6865 | 154..275 | 173 | 61.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2274..2608 | 119..464 | 169 | 55.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2595..2898 | 163..471 | 162 | 54.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2416..2514 | 164..262 | 161 | 65 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6725..6839 | 154..268 | 161 | 60 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6800..6899 | 154..256 | 157 | 64.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6758..6886 | 154..278 | 149 | 59.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2358..2480 | 154..270 | 143 | 59.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2760..2987 | 163..383 | 137 | 57.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6783..7100 | 164..472 | 127 | 54.9 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1085..1167 | 154..236 | 127 | 61.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6727..6908 | 198..381 | 121 | 56.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1510..1587 | 179..256 | 120 | 61.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2805..2895 | 166..258 | 118 | 61.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1505..1591 | 155..239 | 115 | 60.9 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1061..1142 | 154..235 | 113 | 59.8 | Plus |
| GATE | 8507 | GATE DME010298 8507bp Derived from AJ010298 (e1315889) (Rel. 56, Last updated, Version 1). | 377..423 | 1004..1051 | 111 | 72.9 | Plus |
FMO03027.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:01:59 Download gff for
FMO03027.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| daw-RA | 538..1521 | 27..1015 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:04:30 Download gff for
FMO03027.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| daw-RB | 663..1646 | 27..1015 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:25:58 Download gff for
FMO03027.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| daw-RB | 663..1646 | 27..1015 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:25:58 Download gff for
FMO03027.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2809301..2810253 | 27..985 | 98 | -> | Plus |
| 2L | 2810370..2810398 | 986..1015 | 96 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:04:30 Download gff for
FMO03027.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2809301..2810253 | 27..985 | 98 | -> | Plus |
| arm_2L | 2810370..2810398 | 986..1015 | 96 | == | Plus |
