FMO03030.5prime Sequence
1253 bp (872 high quality bases) assembled on 2008-07-09
> FMO03030.5prime
TATAGCATACCTAATACAAAGTTATCAGTCGACATGGATTCGGATACGGA
CTCGGAGCGGGAGAAGAGCAGCGATCCCAACGAGGGACTGCTCAGTAGCG
ATGACAAGACATTCCACGACGATGATGAACCGGCGGAGGATTCCTCTCCG
GCGGACGATGAGGAGGAGCCCGAGGAGGAGGAGTGCCTGCTGCCGCAGAA
GAAGGCACAGATTCGCTGCGACCAAGACCAGCCACCTTTGGTGGTCTTGG
TACAGCCGTCGGCGGAAGCCATAGAAGTGCGCCAAGAAATCGATGATACC
AATCCGGTGGCAGTAGCTGCCAAAGCTAGCGATATGGATGGGGATTCGCA
ACTGGAGGTGATGGAACACCAAATGGAGACCGTAACCGAACCGGATCCCG
AGCCTCCGAAGTGTCCAACATCCCTGCGCGATAGTGTCCGCGAGTCCGTT
GAATGCTTCTATTCCGCCCAGGATCTTCTCGAGTACGGACACATGCTGTC
CTCCACTTCGATGGTCCGAACACCGGATGTGGAGTCTGGCTACTTTGAGA
AGTCCGAGAGCGATGCTTCGCGCGACGAGTGGGAGGGTCCGTCGTCGTCA
TCCTCGGGCGCAGCCCGTTGTCGCCTTCTCTCCGGCATTTCCGGACTCTC
CGTCTCTTCGTCGAGTCGCCACAGTGCCGAGGGTTTGCGCATGGAACTGA
GCCGATTTCGCACCATGATCGAGACTCTCGAGCGGGGAAAGTCTCGAGAA
ATCGCAATCGGACCTGCAGTTGAAGGCCAAGAGCAAGGCGAAGCCAAAGC
CCAAGCAGAGATCCCACGTACAGGATGCGGCTGGGGAAAGTGGTTCGGAA
CAGGTTCCGAGAGGGGCTTCTGGTCAACGATCTTCGGCAGGCCGAGCCTG
GCGATCAGTCAGGATGAAGAGGAGCGCCTTGCCGGACATACAGAAAGCTA
CTCGGGCTTCTCGAGCATGCTCTGAGGACTACGCGCGAGAGACTTTCGGG
AGCCCGAAAGATCGGGCGCTGCGTATTGCAATCGAACGGCGTTATACGCC
TAATTAAATCCTCGCTTGTTTCAAGCGCCTGTTGAAATATCACGGAATTT
CATGGATTGACCTATGGAATGAACTCGAGAGCCTCCCCAAAGAAACGCGG
AAACCTGGCAATTGCCAACCTAAGGGGAAAGGAGTGCCGGGACTCAATAT
CTCGAATTTTTCAAACCTTCCAAACTCACAAGTCGCGAAATGTGCGCCCG
TGG
FMO03030.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:59:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dlg1-RM | 3196 | CG1725-RM | 47..1184 | 34..1180 | 4725 | 95.3 | Plus |
| dlg1-RF | 2554 | CG1725-RF | 47..1184 | 34..1180 | 4725 | 95.3 | Plus |
| dlg1-RU | 2524 | CG536-RU | 830..1057 | 945..1180 | 360 | 81.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:59:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 11375809..11376718 | 34..944 | 4290 | 98.8 | Plus |
| X | 23542271 | X | 11376901..11376967 | 1010..1078 | 215 | 94.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:59:49 has no hits.
FMO03030.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:00:27 Download gff for
FMO03030.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dlg1-RF | 44..961 | 28..949 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:12:05 Download gff for
FMO03030.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dlg1-RF | 44..961 | 28..949 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:46:37 Download gff for
FMO03030.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dlg1-RF | 44..961 | 28..949 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:46:37 Download gff for
FMO03030.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 11375806..11376718 | 28..944 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:12:05 Download gff for
FMO03030.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 11269839..11270751 | 28..944 | 98 | -> | Plus |
