FMO03031.5prime Sequence
1324 bp (925 high quality bases) assembled on 2008-07-09
> FMO03031.5prime
CGTATAGCATACATTATACGAAGTTATCAGTCGACATGCGCCAGCAGTTC
CTGGTCATATCTGCCTTTCACGAGGACATCATCGAAATAGCCGAGACCCT
GAACATGTTTCACGTGGGCAATCAGTGGATGATTTTCGTGCTGGACATGG
TGGCTCGGGACTTCGATGCCGGCACTGTGACCATAAACCTGGACGAGGGA
GCCAACATAGCCTTCGCCCTCAACGAAACGGATCCCAACTGCCAGGACTC
GCTAAACTGCACGATCTCGGAAATTAGTCTCGCTCTGGTCAACGCTATTT
CCAAAATTACCGTCGAGGAGGAGTCCATATATGGTGAGATCTCCGATGAG
GAATGGGAGGCCATCCGCTTTACCAAGCAGGAAAAGCAGGCCGAGATTCT
GGAGTACATGAAGGAATTCCTGAAGACCAATGCCAAGTGCTCCAGCTGCG
CGAGATGGCGCGTGGAGACGGCCATTACCTGGGGCAAAAGCCAGGAGAAT
CGCAAGTTTCGCTCAACTCCCCAACGCGACGCTAAGAACCGAAATTTTGA
GTTCATCAACATTGGCTATTGGACACCCGTGCTGGGATTCGTCTGCCAGG
AGCTCGCCTTTCCGCACATCGAGCACCACTTCCGCAACATAACCATGGAC
ATTCTGACCGTGCACAATCCACCCTGGCAAATCCTTACCAAGAACAGCAA
TGGGGTCATCGTGGAGCACAAGGGCATTGTTATGGGAGATCGTCAAGGAG
CTGAGTCGCGCCCTAAACTTCAGCTACTACCTTCACGAAGCCTCCGCATG
GAAGGAAGAAGATTCACTCAGCACATCAGCGGGCGGAAATGAAAGCGACG
AGCTAGTTGGTTCCATGACCTTTCGTATACCCCTATCGAGGGGGTGGAAG
ATGGTTGCAGGGCAAATCAGTTTTTCATCGGTGCCGTGGCCAGCCACCGT
TGAGGGATCCCGACCAAAAGCCCTTTCAATTATACCCAGCCCCATCAGTT
GTGTCAAAAGTTCCTCAGTCAACCACCCCGCAAGCCGGGAGTGAAGGGGC
CCCGGCATTACCTTGGTTCACCGGCAACCCTTCCACCGTGGAAGAACCTT
GGGTTCTGGCCAAATGGGGCAATCCATTCCTGGCTGAATGGGCTCCCACA
CGCCTGGTACGGCCAATTAAATTGCGCCTAAACCTCCCCTTGGAAAGGAA
TGATTGCGAAAATCTGTGGGGGCCCGTCACACAGGTTAAAGAGAACCGTG
ATTTTGGCATATATATATATCCGGGGGCCATGTTTGTATATAACACACAC
AGGGGGGGGGAAGGCACCACGGGA
FMO03031.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:41:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ir93a-RD | 2742 | CG42315-RD | 694..1727 | 36..1092 | 4545 | 96.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:41:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 20853873..20854251 | 414..36 | 1895 | 100 | Minus |
| 3R | 32079331 | 3R | 20853124..20853308 | 847..662 | 865 | 98.9 | Minus |
| 3R | 32079331 | 3R | 20853359..20853507 | 665..517 | 745 | 100 | Minus |
| 3R | 32079331 | 3R | 20853565..20853669 | 516..412 | 525 | 100 | Minus |
| 3R | 32079331 | 3R | 20852934..20853071 | 992..847 | 305 | 91.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:41:42 has no hits.
FMO03031.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2010-07-30 09:27:09 Download gff for
FMO03031.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17274-RA | 333..1338 | 29..1054 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:55:12 Download gff for
FMO03031.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ir93a-RD | 689..1694 | 29..1054 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:15:08 Download gff for
FMO03031.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ir93a-RD | 689..1694 | 29..1054 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:15:08 Download gff for
FMO03031.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 20853565..20853667 | 414..516 | 100 | <- | Minus |
| 3R | 20852918..20853071 | 847..1011 | 91 | <- | Minus |
| 3R | 20853125..20853304 | 666..846 | 99 | <- | Minus |
| 3R | 20853359..20853507 | 517..665 | 100 | <- | Minus |
| 3R | 20853874..20854256 | 29..413 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:55:12 Download gff for
FMO03031.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 16678640..16678793 | 847..1011 | 91 | <- | Minus |
| arm_3R | 16678847..16679026 | 666..846 | 99 | <- | Minus |
| arm_3R | 16679081..16679229 | 517..665 | 100 | <- | Minus |
| arm_3R | 16679287..16679389 | 414..516 | 100 | <- | Minus |
| arm_3R | 16679596..16679978 | 29..413 | 99 | | Minus |
