FMO03034.5prime Sequence
1188 bp (331 high quality bases) assembled on 2008-07-09
> FMO03034.5prime
CGTATAGCATACATTATACGAAGTTATCAATCCACATGAAAGCTCTGGAA
GGTTTCACTATTCTTCTCGCATTAGTGGGTGTTATTCCCCGGATCGAGGG
CTGCATTAGGGTCCCACCGGGAGTCACAGCACCCAAGTCACCGGTGGATG
ATAACTATGTGCTGTCCGTAAACGGAAATACGCAGAGTTATGTGCCCGGT
CAAAGGTATAATGTTAGCCTCATTGCATTTTCTGGCTTGTCCTTCATTAA
CTTTATGCTGGCCCTGGATTTGGAGAGTGGTGACGGCGATGGTGACGCCA
ATGCCCTGGGCACCTGGGAAATCGCCGATCTCCCCGAGACCCGTTTCAGT
CCGCGCTGCCCAAATCTTGTCCAGAATACCAACACGAACGTGAATACACG
CGTGGATGTGTTCTGGGTGGCTCCTTCGAATCCGGGACAGGGATGCATCC
TGCTGAGGGCTACGGTGATGCAACATCAAGATGTGTGGTTCATGGATGAT
GGCTTCCTTACCAAGCGTATGTGCGAGGAGGAGGTGGACCACATTGACAC
CCAGCCCAACATCGTGAATCCGTGCTGTGCCTGTGACAAGGCCAAATATG
AGCTTACCTTCGAAGGCAAGTGGTCGCGTCACACACATCCCAAGGACTTT
CCAGCGAATAGCTGGCGCACGCATTCATCGATATCATTGGTGCCTCGCAC
ACACTGGACTACAGATTCTGGCAGTATGGAGAGCTGGCCAGCGAGGGGCT
GCGTGAGGTGGCGGAACATGGCTCCTCTATGACCTTGGATAGTGAGCTGA
ACGATCAAACGAACACATTCGCACGATCATAAAGGAAGGGGCATTGCCTA
TCCGAATGTCACGGGCAAAACATTTGCCGTTTTCGCGTCGACTCCAACCA
CATTTGATCTCCTCGTATCATGGTGAATCCTCTCATACTGGATCAGTTGG
TGTATCAGGCTCGAGCTATGTCAGCCCACCTGTCCTGGGGCGGAGAACAA
GGTGCACCATCTATATCCTAGGATGCGCCCACCATAGTGTTCATTTATAT
TGTTCGCTGACTGCAACAGGTGCCTACGAATGGTGTGGAACGAATCGATA
AACTCCCACGATTCGGTCGGCTTAGGATCCGACTGGAACTAGTTACATGG
CACCTGACTGACTGTACACTTACGAGAGACTCCAGATA
FMO03034.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:38:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17739-RA | 2830 | CG17739-RA | 36..1088 | 36..1075 | 4160 | 94 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:38:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12307558..12307947 | 213..602 | 1725 | 96.2 | Plus |
| 2R | 25286936 | 2R | 12307999..12308425 | 601..1018 | 1245 | 92.1 | Plus |
| 2R | 25286936 | 2R | 12307288..12307465 | 36..213 | 875 | 99.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:38:49 has no hits.
FMO03034.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:00:25 Download gff for
FMO03034.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17739-RA | 40..1041 | 36..1027 | 94 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:54:14 Download gff for
FMO03034.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17739-RA | 36..1037 | 36..1027 | 94 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:13:29 Download gff for
FMO03034.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17739-RA | 36..1037 | 36..1027 | 94 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:13:29 Download gff for
FMO03034.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12307288..12307465 | 36..213 | 99 | -> | Plus |
| 2R | 12307559..12307947 | 214..602 | 96 | -> | Plus |
| 2R | 12308001..12308448 | 603..1039 | 91 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:54:14 Download gff for
FMO03034.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8194793..8194970 | 36..213 | 99 | -> | Plus |
| arm_2R | 8195064..8195452 | 214..602 | 96 | -> | Plus |
| arm_2R | 8195506..8195953 | 603..1039 | 91 | -> | Plus |
