FMO03035.5prime Sequence
1021 bp (885 high quality bases) assembled on 2008-07-09
> FMO03035.5prime
TATAGCATCCACTATACGAAGTTATCAGTCGACATGATGTCCAGTCCTCG
CCATAACGCAAGTGGCAGCGAGTTTGAGACCTATGACATACCCAAGCCGG
CCACGCCCGTTCCGCTGAACTACGACAGTCCCAGAAGCGGTCTTCCGAAG
GCTTCTAACTCTACAACGACCTCCAGCTCCAGCCTAGGCACCCGGTTTGA
GACACTCAAGAGCGTGGCCGCATCCATTGCGGAGGAGTCTTACGATGTGC
CACGACCCCTGATCTTAGGCAGCAACCAGCTCCAGCAGCAAATGTCACAG
ATGACGCCAAGCAGTTCCGCCTCCTCACTGCTGACCAGCGACAGCCTCTC
CCTGAGCTTTTCCAGCTCGAACCGTTCATCGCTGGCCAACATGCCGGATT
ACGACATCCCTCGACGAAATCCGCTTCCTGTGCGCCGTCAACAAAGTGGG
CTGACCTACGACTTTCCGCTGCCTCCGTTGCAGGAGCAGGTTCCGCGGGT
GCTGTGCACACCCTCTACCGTCACCACTACCAAAGAACTGCCTCTAGAGC
TCTCCTCCGCACTAGAAACACTCGCAAAGCTGCAACTGCAGACTACTGCG
GCCATTAATCGATTGCTAAAGTTTCGTAGTACCCAATTGGCGCACCCGCG
CTCAACTCGAGCCGGCCATCATGGATCTGAGACTGGCCGCCCTGCGTCTG
CGCACAACACTCCACGACCTGGCAGAGTTCGGGGAGGGAGCCCTGGGAAA
CGCCACGCGTTCGGAGGACCGAAACCTGGCCCTCAGCTGCGGCCCTTGGT
GCGGGCTTTGCGAGATGCCAACAAGCTGATTCACGACTCTTCCGAATCCC
TCGATGCCAGGGAGCCTGGTCTATAAATCAGCTGGGCAGAAGCGACTAGA
ACTATGGTTGCTCGACCCTGGACTCTCTGGACCAACTGATGTTTGTGCTA
TACGCTCACTGAGGACGGGCGCTCAACTACAGTTTCATACAGGGCCACGC
CTCCCTACTTTTTTAAGCGGG
FMO03035.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:34:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| p130CAS-RF | 2629 | CG1212-RF | 314..1303 | 34..1020 | 4455 | 97.2 | Plus |
| p130CAS-RE | 2585 | CG1212-RE | 270..1259 | 34..1020 | 4455 | 97.2 | Plus |
| p130CAS-RD | 3292 | CG1212-RD | 977..1966 | 34..1020 | 4455 | 97.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:34:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 172202..173185 | 34..1013 | 4280 | 97.1 | Plus |
Blast to na_te.dros performed 2014-11-28 20:34:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rt1c | 5443 | Rt1c RT1C 5443bp | 1702..1763 | 354..293 | 112 | 64.5 | Minus |
FMO03035.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:06:33 Download gff for
FMO03035.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| p130CAS-RC | 925..1914 | 34..1021 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:30:40 Download gff for
FMO03035.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| p130CAS-RD | 977..1966 | 34..1021 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:21:46 Download gff for
FMO03035.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| p130CAS-RD | 977..1966 | 34..1021 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:21:46 Download gff for
FMO03035.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 172202..173191 | 34..1021 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:30:40 Download gff for
FMO03035.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 172202..173191 | 34..1021 | 97 | | Plus |
