FMO03036.5prime Sequence
786 bp (786 high quality bases) assembled on 2008-07-09
> FMO03036.5prime
TTCGTATAGCATACATTAAACGAAGTTATCAGTCGACATGGGAAGTCCCT
TAACCCCTCCCGTTAGTAAGAATGGTTACGAGTCGTCACGTACCGTAGAA
AAGTCATCGACCTACAAGTCCACCTCGAACTACGTCACCGATTCGAATAT
TCGTGCCAGTCCCTCGCTTTACGGAACTGCCGAGCGACTGCGTCGAACCG
GATCCCCCGAGCCCCGCATCGACCATTCCTCCAATGTGAGGGTGTCCTCG
ATGAAGCCGGCTTCCGCCAGGCGGGACAGCTGGGACGTCATCAACAAGAC
GAAGCACATGCTCTCGCACAATTCGCTCGAATCGCTGGCGAACATGACCG
AGAAGCAGCTGAACACGGAACTGCAATACAATCGCCCGGATTTGGACCAC
GAGACGCACCGGAACACCCAATACAACAAGTTCGCCCTGCACAAGCAGCA
GCAGCAGCAGTCGGACTATCGCCGGGATTCCCCCGATGATGGAGAGCGCT
ACAAACCCAGTGCCATTACAGTCAAGTCACATTCGAACAATACGTATACG
GACAAGTCCGGTGGATATACGAAAACCGTTAAGGAATCCAGCGAGCATGT
GGTTACCGAGAGCAATGGCCATGGCCCCTCCCCGGGCTATGGATACAGCT
CCCTCTCCAGATTTCGACCCATAGACGGCAATGCCACTGGTGCCAGGGCC
ATTCGAGTGCAGGATATTCCGAATGGCTCTATTGGACGGCCTGTCGAGTT
CGAGATCGATGGCTCGAGGGCGGGCTCCGGCAATTT
FMO03036.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:27:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| jbug-RN | 9391 | CG30092-RN | 2865..3614 | 37..786 | 3720 | 99.7 | Plus |
| jbug-RM | 9043 | CG30092-RM | 2517..3266 | 37..786 | 3720 | 99.7 | Plus |
| jbug-RF | 9430 | CG30092-RF | 2904..3653 | 37..786 | 3720 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:27:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 22730310..22730745 | 504..69 | 2180 | 100 | Minus |
| 2R | 25286936 | 2R | 22729952..22730233 | 786..505 | 1410 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:27:05 has no hits.
FMO03036.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:01:51 Download gff for
FMO03036.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| jbug-RB | 2721..3476 | 29..786 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:41:46 Download gff for
FMO03036.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| jbug-RF | 2898..3653 | 29..786 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:01:40 Download gff for
FMO03036.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| jbug-RF | 2898..3653 | 29..786 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:01:40 Download gff for
FMO03036.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 22729952..22730233 | 505..786 | 100 | <- | Minus |
| 2R | 22730310..22730743 | 71..504 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:41:46 Download gff for
FMO03036.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 18617457..18617738 | 505..786 | 100 | <- | Minus |
| arm_2R | 18617815..18618248 | 71..504 | 100 | <- | Minus |
