FMO03037.5prime Sequence
857 bp (770 high quality bases) assembled on 2008-07-09
> FMO03037.5prime
AGCATCCATAATACGAAGTTATCAGTCGACATGGATGCGACGTGGGCAAT
GGAGCAGCTGCTGTCTGCAGTTGAGATGGGAGGTAGCCACAGCGAGGCCA
CCACACCAACGGCCACGACCACCATATCGATCTGGAGCGCCCCCTCCGAG
GGCAGTGGCTCTAGTTCCATGGACCCTGTCTCCTTTCGGTTCCACTTGGA
CGGGCAGCCTATACTGCCACCGCTGATGACGAGCGCCAAGAAGCGCGAGG
TGCAGCTGGCCCGCCAGATGGCAGAAGCGCTGGAGAAGCGGTACCGCCTG
GCCAGACACTCGGCGGGATCCGACATGGCCAGTAGGAGAAGTGTGTCACA
GCTGCAGCAGACAGAAACGTTAATCTATGACAGCACACGGGGCCAGGCTC
GTCCTCAGACTCTGGTCTTTGGCAAACAGTTGCCCACCATACAGGTGGAT
CCTCCCACGCCTCAACCATTTGTGAAATCAATAGAAAACACTTCCCCAAG
GCGGCATAATCGCATTACCGATCGTATCCTGCAGTTCGAGCAGTCGGGAC
TGGGTAAGCTGCTGCCCAAAGTTCCAGATAACTGTATCCTGCGCACAAGT
CCTGCGGTAGCCGAAGACCAGCAGGATCAGGATACAAAGGACACAACGGC
AAGGGAGCTCGGCAGTCCACTGGCAGAACCAGCTAATTTTTCACCGTTCG
AGAAGTTTCACACTAGAGGAAGCCCTCCCAGGTTCTCGTGGAGCACATGG
AGAGGGAGGCCCTGGCTGTGAAACCCAGCCAGAGTTGGCCAACTTCGAGA
ACAGACCATCGAGTCTCAGGCCAAGCGGGTGAACCGTAGTGCAAGGAGTA
TTATCAA
FMO03037.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:47:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cp110-RH | 2320 | CG14617-RH | 274..1096 | 31..853 | 3995 | 99.3 | Plus |
| Cp110-RG | 2650 | CG14617-RG | 453..1275 | 31..853 | 3995 | 99.3 | Plus |
| Cp110-RE | 2919 | CG14617-RE | 343..1165 | 31..853 | 3995 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:47:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 22483086..22483714 | 225..853 | 2925 | 99 | Plus |
| X | 23542271 | X | 22482841..22483026 | 44..229 | 915 | 99.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:47:20 has no hits.
FMO03037.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:04:47 Download gff for
FMO03037.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14617-RC | 321..1150 | 23..855 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:04:32 Download gff for
FMO03037.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cp110-RE | 338..1167 | 23..855 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:26:01 Download gff for
FMO03037.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cp110-RE | 338..1167 | 23..855 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:26:01 Download gff for
FMO03037.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 22482842..22483022 | 45..225 | 100 | -> | Plus |
| X | 22483087..22483716 | 226..855 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:04:32 Download gff for
FMO03037.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 21884678..21884858 | 45..225 | 100 | -> | Plus |
| arm_X | 21884923..21885552 | 226..855 | 98 | | Plus |
