FMO03038.5prime Sequence
1241 bp (954 high quality bases) assembled on 2008-07-09
> FMO03038.5prime
TCGTATAGCATACATTATACGAAGTTATCAGTCGACATGGCCGCTGGAAT
GTTGACTGATCGGGAGCGGGAGGCGATCGTCAGCAATCTGACCAAGGACG
TGCAGGCTCTGAGGGAAATGGTGCGGAGTCGGGAGAGCGAGCTGGTCAAG
CTGCACCGCGAAATCCACAAGCTGAAGAGTGTTCTCCAGCAGACCACCAA
CAACCTGAACGTCACCCGAAATGAGAAGGCCAAAAAGAAGCTCTACTCCT
TGCCAGAGCAATGTGGCGAGCAGGAAAGTAGGAATCAGAATCCACATTTG
TGCAGCTCCTGCGGCATGGTGCTGCCCACCAGTCCGGAGTTTGCCCTGGA
GGCGCTTTCTCTGGGACCGCTGTCCCCATTAGCATCAACATCTTCCGCCT
CCCCCTCTGGACGAACTTCTGCTGATGAAGTGCGACCCAAGGCGATGCCC
GCTGCTATCAAGAAACAAGGTGTCTCCGCCGAGAGCTGTGTGCAGTCCAT
GCAGCAATCCTACAGCATACCGATTCCAAAATACGAAAAGGATTTCAGTG
ATAAGCAGCAAATCAAAGACGCCATTATGGACAATGACTTCCTAAAGAAC
ATAGACGCATCGCAGGTGCGGGAACTGGTAGATTCAATGTACTCCAAGAG
CATAGCAGCCGGCGAGTTTGTGATCCGCGAGGGTGAAGTGGGCGCACATC
TGTACGTCTCCGCCGCCGGCGAGTTTGCGGTGATGCAGCAGGGCAAGGTG
CTGGACAAGATGGGGGCGGGAAAGGCGTTTGGGGAGCTGGCTATCCTCTA
CAACTGCACCAGAACGGCCTCCATTCGAGTCCTAGTGAGGCCGCGAGGGT
ATGGGTGCTGGACAGACGGGTCTTTCAGCAGATTATGATGTGCACGGGCC
TCCAGCGAATCAAAAACAGCGTGAACTTCCTGAGATCCGGTGCCTCTGCT
GATGAACATTAGTGAAGAAGCTGCTGGCCAAGATACAGACGTTCTGGAGC
TGGAGTCTACGCCGCTGGCACCTACATATCCGGCAAGGAACGCCGGGGTA
CAGTTTTCTTCTTGATCTTCACAGGGCATGTCCGAGTGGACCCAAAACTA
ACTCCCACCCTCCCCGAAGAAACGGAAGTGGCTACGCTTATCCCAGGGGA
AACTATTTTGGGAAAGCAGGCCTGATCTCGAGAAAAGCGATACTGGCCAC
ATACTTCCACGATTTTACACAGAGAGTAGAGAGCTCTATGT
FMO03038.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:40:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pkg21D-RA | 2583 | CG3324-RA | 170..1309 | 37..1177 | 5095 | 97.4 | Plus |
| CG3544-RB | 4359 | CG3544-RB | 3134..3764 | 1177..546 | 2550 | 95.3 | Minus |
| CG3544-RB | 4359 | CG3544-RB | 3825..4197 | 548..176 | 1865 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:40:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 787600..788181 | 1126..546 | 2255 | 95.9 | Minus |
| 2L | 23513712 | 2L | 788242..788614 | 548..176 | 1865 | 100 | Minus |
| 2L | 23513712 | 2L | 790489..790629 | 177..37 | 705 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:40:26 has no hits.
FMO03038.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:06:36 Download gff for
FMO03038.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pkg21D-RA | 165..1312 | 34..1182 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:46:12 Download gff for
FMO03038.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pkg21D-RA | 168..1315 | 34..1182 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:26:01 Download gff for
FMO03038.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pkg21D-RA | 168..1315 | 34..1182 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:26:01 Download gff for
FMO03038.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 790489..790631 | 34..177 | 99 | | Minus |
| 2L | 787545..788178 | 549..1182 | 95 | <- | Minus |
| 2L | 788242..788612 | 178..548 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:46:12 Download gff for
FMO03038.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 790489..790631 | 34..177 | 99 | | Minus |
| arm_2L | 787545..788178 | 549..1182 | 95 | <- | Minus |
| arm_2L | 788242..788612 | 178..548 | 100 | <- | Minus |
