FMO03039.5prime Sequence
1251 bp (828 high quality bases) assembled on 2008-07-09
> FMO03039.5prime
TTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGATACCGACAA
GCGTCCCCAACTCACCGCCGCCAGCGGGTTTGGGCCATAATGGAGCATCT
GCCTCCTTGGGCTCGGCTACTGCGGCGGCCGGAGGAGGGATGCTGTCCGG
CTTGGGAATGGTGGCGGTCTCTGGATGTGGGTCGGCAGGAACAGGAGCTC
AAAATAACTACGGTTCCGTTGTGCTCGGCTTGGCCTCGCTAATCCTCGAG
GGCAGACCCATTGCCGACGATGAGTACCAGCAGCAGACGGTGGGAGTAGT
CGGTTCAGGAGCAGCAACAGCAGGATCTGGGGGAGGACGCCTATCGCCAC
GACCCTCCACCTCCAGGGCGGCCATTAACATCACAACGAATCCCTATGGT
TCCATGGGAGGATCGGAAAATAGAGCCGTCAATGGAAGTGGTTCGACTGG
GTCGCCCAGCAGTAGTTCGCTAACCCACCAGCGATGGACACAGAAGCTCT
GCCAGCTGCGTCAGATTTCGCCGGCTGCCCAGACGATGAACGCCGAACCG
GAATTGGTTTCTTTGGCCATCAATGATCTTAACAAGGATCATGGCGATTA
TGAAATTGTACGACGTGTCATGCTCAATCGAGCTGGTGGAACGGGTTTGG
TTAGCAGTGCCGGCGGTGGAACCAACAATTCCAGTGCCGCCAGTTCGCCG
GGCTCGAATTCGTCGGACAACATTCTCCACTCGCTGCAATCGCTGGCCAC
CACCTGCTTAAGAGGTGGACCTGCCTTGGCACCGCCACCATCAGTTGAGT
CAAGACCTCTGAATCTGGGCTTTCTTTGGTCGGGTTTGGGGGGATCCGGT
GGGCCGAGATTGGGATTTGGAGGAAGGAGCACCAGCATTAACAACACACC
AACAACAACGGCAACTGCCACTGCCAGCAGCGGAGCAAGCAGCACCAGCA
TCGACGACCTAACACAGGTCGTACTGTGATCAGTATCCTCAAGAAGATTG
GTCTTGACCACGACGAAATGCCATCGGAAGGCTGAGATCACATCTGTGAA
TTGTCCTACGTGAATTATGAACTGCAACGTTGACGGGCGGAATGCAATGA
AAATGGAAGCATCTGGACAGACGCCAACTCGTTGCACTCAAGTCTATCTG
GGTTCGTAGACAAAGCTCTTGCTGACAATTGTCTATATAGTGGCAGCAAG
TAAAAGATTCCTCTCACCCCCAGCGAATGGAAACTATACCCATCATCTAC
C
FMO03039.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:17:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9005-RC | 5832 | CG9005-RC | 943..2083 | 37..1174 | 4670 | 94.9 | Plus |
| CG9005-RB | 5982 | CG9005-RB | 722..1862 | 37..1174 | 4670 | 94.9 | Plus |
| CG9005-RA | 5273 | CG9005-RA | 722..1862 | 37..1174 | 4670 | 94.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:16:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11624167..11625193 | 1065..37 | 4370 | 95.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:16:59 has no hits.
FMO03039.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:04:49 Download gff for
FMO03039.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9005-RA | 773..1723 | 34..984 | 97 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:42:49 Download gff for
FMO03039.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9005-RA | 718..1668 | 34..984 | 97 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:00:37 Download gff for
FMO03039.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9005-RA | 718..1668 | 34..984 | 97 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:00:37 Download gff for
FMO03039.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11624247..11625197 | 34..984 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:42:49 Download gff for
FMO03039.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7511752..7512702 | 34..984 | 97 | | Minus |
