FMO03041.5prime Sequence
1287 bp (992 high quality bases) assembled on 2008-07-09
> FMO03041.5prime
TTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGACACAAGGTG
CAGCGCCGCAGGACTCACAGGGCGACATCCTGCCCACCCGCCCGCTGCAT
ACCAAATTAGACATACAGAAAATCCCAGAGGATGAGGCTGGCGCTGACGC
CACACAAAACGCTGCAACAATAATTTTAACGCCGACATCATTAAATTTAA
CAAATACAACAACACAAAATGTTGCCGCCAACAATGCGGGCAACTCCAGC
ACCACCACCAGCACCAACACCAACTACGGCCCAGGATCCGTCTCCGGCTA
CCCAACTCCGAACGCAACTCCGGGCGACGAGTACAAAGGACCCAAATGGT
GGCTATATATCCGTTCGCATTGGGTGAACACTTCCGAGCTGGTGGCCCTA
CTGGCCATTTTCCTGGGCCTTTGGGCCATGGGCTGGGTTCTGCTGCCGGA
GTACTCCCAACCACCGACCGTCATCATGCGCATTGCATTCCTCTTTGTGG
GCGCCCAGATCTCCGGCATCCTGGTCACCTTTGTCCATCTGCCCGACATG
CTGGGCATGCTTTTCTTTGGCGTACTTTATGCCAACCTGGGCCTGGCCAA
TTTCGAGGGCTATCAGAAGTTTGAGCTGTTCCTCAGGGAAATGGCCCTGA
TCAACATCATGTTGCTGGCTGGCCTCGGGCTGGATGGAGATGCCTTCAAG
CGGCTGTGGTTCATGATACTCCGGTTAACCCTGCTGCCCACAATTGTGGA
GGTGGCAGCCATCGCCGGACTGGCCATCTTACACTCTCCATGCCCTGGCT
GTGGGGCATTGCTTTGGGCCTTGTCATCACCGCCGTTTCACGGATGTGGT
CGTCACCGTGATGCTGAAGTTGAAGGAGATCGACTCGGCCTGAACAGCGG
CATTCATACGCTCATCTATGCCATGACCACATGCAACGATGTGATAGCCA
TCTTCTTGTTTGGCGTGATATCAACGTATATTCTCAACGACTTCGCTTAC
CCAGCAAGTGCTGCAGGGTTCGCATTGGCATCGGGATGGACTCGTTTTTG
GCTATCTCTACCGGCTCGAATGCCTCCAGAACTAGCCATCCCGGGACGCG
AACGTACGACAATGGCCTCCCGCTTCCAACTCACCATTCCCTGGGCGAAC
CCATTCCAGTTGTGGAAGTGAGCACTGCACCCGCAGCTCTCCCATCTCAT
CCGGTTCTACGTCTGCCGGAACCTTGTGTGTACGACACGCCTTTAATGGT
AGAAGATATGCCCGCGCGGACACGGAAGGCAGACGTA
FMO03041.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:12:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nha2-RB | 2625 | CG43442-RB | 737..1838 | 36..1137 | 5060 | 97.8 | Plus |
| Nha2-RA | 2162 | CG43442-RA | 274..1375 | 36..1137 | 5060 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:12:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 22991135..22991449 | 350..36 | 1575 | 100 | Minus |
| 3R | 32079331 | 3R | 22986803..22987092 | 637..348 | 1450 | 100 | Minus |
| 3R | 32079331 | 3R | 22986563..22986747 | 818..635 | 875 | 99.5 | Minus |
| 3R | 32079331 | 3R | 22986332..22986486 | 970..818 | 630 | 96.8 | Minus |
| 3R | 32079331 | 3R | 22986113..22986219 | 1100..991 | 250 | 90.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:12:40 has no hits.
FMO03041.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:06:38 Download gff for
FMO03041.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tango12-RA | 274..1375 | 36..1137 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:06:49 Download gff for
FMO03041.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nha2-RA | 274..1375 | 36..1137 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:41:40 Download gff for
FMO03041.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nha2-RA | 274..1375 | 36..1137 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:41:40 Download gff for
FMO03041.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 22986310..22986485 | 819..990 | 95 | <- | Minus |
| 3R | 22986563..22986745 | 637..818 | 99 | <- | Minus |
| 3R | 22986804..22987091 | 349..636 | 100 | <- | Minus |
| 3R | 22991137..22991449 | 36..348 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:06:49 Download gff for
FMO03041.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18816859..18817171 | 36..348 | 100 | | Minus |
| arm_3R | 18812032..18812207 | 819..990 | 95 | <- | Minus |
| arm_3R | 18812285..18812467 | 637..818 | 99 | <- | Minus |
| arm_3R | 18812526..18812813 | 349..636 | 100 | <- | Minus |
