FMO03042.5prime Sequence
1265 bp (870 high quality bases) assembled on 2008-07-09
> FMO03042.5prime
TTCGTATAGCATAATAAAACGAAGTTATCAGTCGACATGATTCCCTGGAT
TTGCCTAAGCGCGGCCATTGTGCTCATCCTGTGCCCCCTTCACACATCCT
CGCGCAGCTACAGCAACGGTCTGATCTTCTACCAACTGAAGACCCACCGA
CCCTACCTACCGCCCACGGTCAGTGTGTCCAGGGGCCGAAATCTGGCCAG
CGTCAAGTACTCCGAAAAGGGGTCCATCTGGTCCACCTTTGGCCAGCCCT
GCGAGTGCAGCGGACCCACCTGCGGATGTTGCGCCGGTCTCAAGGTCGAT
CAGTACCGATTCGATCAGAAAGTGTGCGCCAACGTGAGCTTCGTGCCGCA
TCTGGAGGAGGCCCAACTGGAGGTCTTTCTTAATGGCAGGCCCTCCTCGA
AATACGGAATCTCGGTGCGCAATCCGGCGCCCTTCTGCATTCCCGTCATG
ATGGGTGTACCGATGGCCATGTGCGTCCAAATGACCGACGTCACAGTGGT
TGGGAACAACCTAAACATGTGCATGGACTTTGTGGTTCGGATGGCCACCA
CCGATCTCTTCGAGATGCATTTCCAGTGCATGCGAATGGGTCTGGATGGT
CTGCAGTATGTGGACAAGAATGGCAAGCCCGTACTGCCGATGGGAGATGG
TCAGAGCGACGATCCGGAGGAGTACGAGTACGCCGAGCTGGAGGATCAAC
CGGAAGAGTATCCTTATCAAGAGGATGTCAAGGAGGAGGCTCCATCCCAG
GGCTATCAACCAGATAACAATCAGCAGCAGAAGAATACAACACTGACCAC
TGATCAGTTAAAGAGGATGAGATGGAGAAGAATCAATCAATGGGCTATCA
ACCTCTCATCATAAATAATCAAGCACAGAAGATTGAGCCTCATTTAATCC
TAGAAGATTTAATCCTACCAACCTTCAAAGAATTCAAACTCTAACGCGAG
GTCAGCTAAACTGGATCAAGTAGATTACGAGGAGGATACACCAAATGAAT
AATCTGTTATCAACACTAGGTCAAATTTAAGGTTGAAGACTAAAAAGAAG
ACAAGCTGGCTTATAAGCCACCAGAGATTCCACGCCTTCAGAAATACCTT
GGATGAAGAATGAACCGATGGGCCTATCACCCCCGATGGCGTTGCTTCCC
TCAAAAGTTCAGAAAACAACCTCTTACCTTAGGAATTCTGAAAGTAGGAG
GAAAACCTTCAGAGCGAGGGATACCCAGAAGGACCACAAAACTTTGAGAA
AAGTGTGGTATCTCC
FMO03042.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:37:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8568-RA | 2647 | CG8568-RA | 208..1354 | 29..1174 | 4885 | 95.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:37:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 17450299..17451137 | 1160..321 | 3150 | 94.6 | Minus |
| X | 23542271 | X | 17452043..17452336 | 322..29 | 1425 | 99 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:37:47 has no hits.
FMO03042.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:00:30 Download gff for
FMO03042.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8568-RA | 208..1072 | 29..892 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:44:28 Download gff for
FMO03042.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8568-RA | 208..1072 | 29..892 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:24:36 Download gff for
FMO03042.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8568-RA | 208..1072 | 29..892 | 99 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:24:36 Download gff for
FMO03042.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 17450565..17451135 | 323..892 | 99 | <- | Minus |
| X | 17452043..17452336 | 29..322 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:44:28 Download gff for
FMO03042.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 17344598..17345168 | 323..892 | 99 | <- | Minus |
| arm_X | 17346076..17346369 | 29..322 | 98 | | Minus |
