FMO03043.5prime Sequence
1234 bp (1037 high quality bases) assembled on 2008-07-09
> FMO03043.5prime
TTCGTATAGCATACCTTATACGAAGTTATCAGTCGACATGTACGGAATGC
TGTACGAGAGCGTGCAGCACTATATCCAGCAGGAGTATGGCATGGAGACC
TGGCGAAAGGTCTGCCAGATTGTCGACTGCAAGCATCAGAGCTTCAAGAC
ACATCAGATCTATCCGGACAAGCTGATGCCGGACTTTGCGGCAGCCCTGT
CCGCCAGCACGGGCGAGTCCTTCGACTTCTGCATGAACTTCTTCGGGCGC
TGTTTTGTGCGATTCTTCAGCAACTTCGGCTACGACAAGATGATCCGCTC
CACAGGGCGATACTTCTGCGACTTCCTGCAGTCCATCGACAACATTCACG
TGCAGATGCGTTTCACCTATCCCAAGATGAAGTCGCCCAGCATGCAGTTG
ACCAACATGGATGACGATGGGGCTGTGATCCTGTACCGCAGCGGCCGAAC
TGGCATGTCCAAGTACCTGATTGGCCAGATGACCGAGGTGGCCAAGGAGT
TCTACGGCCTAGACATGACTGCCTATGTCCTGGAGAGCCAAAATGACATA
TGCGGTGGCACAGCCGGTCCCATCAAGCTTACGGAGGGTCCTCTGACCGT
GATTGTCAAGTATCGGCTGGACTTCGATAATCGCGATTATATGGCCAAGC
GGGTCAATGTCATCGCGCATCCTTCGCAGCTGAAGATGCCGTCGGTGGAC
CTGAATGTGTTCCTCGAGCTGTTTCCCTTCACCATTGTGCTGGATCACGA
CATGAAAATCACACTTGCGGGCGAGAAGATTGTCGAGACGTGGATTCTGC
ATAATCCTGGAGTGAACCCAAAGACCTTTATTGGCAGTCACATATTGGAG
CGGTTCAAGTGCCGTCGTCCCAAGGACACTCAGATCCAATGGGAGACCAT
TCTGCAAATGCGTACAGTTCTCTTCGAGTTTGAGCTCATCCGTACGGGTG
ACAATCGTGCCGCCTTATGATGCGGCCTTGAACTTTGACTTTGAAAGCTT
TGATGAATGCAGCAGCCTGAACGAGGCGCAGGCCATGGCTTTGCCAGTGC
AAGAGTTTAGTGCCGAAAACGCAGAGAGCAGCAACGCCAGCCACCTCCAG
ACGAATCGAATCCGCCCAGGACAGAGACGCCATCGGTGGTATGATCATTC
TTGTTGAAGGACAATGTTCTTATCAAGAGTGTGGAACTCGGAATCTTCTG
TGCAATCTCTATATCGAAAACTTCCGTAGAAAAC
FMO03043.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:27:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gyc-89Db-RA | 2784 | CG14886-RA | 540..1742 | 37..1220 | 5125 | 96.2 | Plus |
| Gyc-89Da-RC | 2339 | CG14885-RC | 231..1187 | 37..994 | 2275 | 82.7 | Plus |
| Gyc-89Da-RB | 2274 | CG14885-RB | 166..1122 | 37..994 | 2275 | 82.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:27:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 16478826..16479831 | 37..1043 | 4925 | 99.5 | Plus |
| 3R | 32079331 | 3R | 16473369..16474325 | 37..994 | 2250 | 82.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:27:10 has no hits.
FMO03043.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:02:03 Download gff for
FMO03043.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gyc-89Db-RA | 276..1393 | 30..1139 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:41:52 Download gff for
FMO03043.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gyc-89Db-RA | 537..1654 | 30..1139 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:01:44 Download gff for
FMO03043.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gyc-89Db-RA | 537..1654 | 30..1139 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:01:44 Download gff for
FMO03043.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 16478823..16479940 | 30..1139 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:41:52 Download gff for
FMO03043.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 12304545..12305662 | 30..1139 | 97 | | Plus |
