FMO03045.5prime Sequence
1227 bp (1057 high quality bases) assembled on 2008-07-09
> FMO03045.5prime
GTATAGCATACATTATACGAAGTTATCAGTCGACATGTCCTTCGCGGATG
ATAGCTATAGCTTTGGTCGCTGCTACGAGTATCAGCCCGATGATTGCAAA
TGGCAGGCTACAGGACCTAGACCAGTGGCCACAGCCGCCGTATTGGCCAC
AAACAGGGAATCATCCAGCAGCACCGAGGGCCGCGAGTCCGCCGTTACTA
TGGAGAGAAACGATGCGGACATTAACTTTCAACGGGTCTCAATTTCGGGT
GAGGACACCAGTGGCGTACCGCTCGAGGATTTGGAGCGGGCCTCGACCCT
GCTGATCGAGGCACTGCGCCTGCGTAGCCACTACATGGCCATGTCGGATC
AATCGTTTCCCTCGACCACGGCTCGATTCCTCAAGACAGTGAAGCTCAAG
GATCGCATCAACAATCTGCCCGTCAAGGAGGTGTCGGAATCTGCAGATGT
CCATTTGAGACATTCGCCAATGAAGATTACGAATCCGTGGAACGTCGAGT
TTCCCAATGACGAAGATTTCAAGATTAAGCCCCTCAACGGAGTGTTTCAC
ATTTACGAGAATGATGACGAAAGCAGTGAGATCAAATACGAATATCCAGA
TATGAGCCAATTCGTAAACGACATGCAGGTCATGTGCAATATGATTGCCG
ATGGGCCATTGAAATCCTTCTGCTATCGACGTCTCTGTTATCTGTCGTCC
AAGTATCAGATGCACGTGCTCCTCAACGAGCTGCGTGAGCTGGCTGCCCA
GAAGGCGGTGCCGCATCGCGATTTCTACAACACCCGCAAGGTGGACACCC
ACATCCATGCCGCATCGTGCATGAACCAAAAGCATCTGCTGCGCTTCATT
AAAAAGACGCTGAAGAACAACGCCAACGAGGTGGTCACCGTCACCAATGG
CCAGCAAATGACACTGGCCCAGGTGTTCCAGTCGATGAACCTGACCACCT
ACGACCTGACCGTCGACATGTTGGACGTCCATGCCGATCGCACACGTTCC
ATCGCTTCGACAGGTTTAACTCAAGTACAATCCCATCGGGGAGTCGCGGC
TCAGGAAGGTCTCCTGAAAACGAACACTTTTCTGAATGGCAAATTACTTT
GCAAAGAATCATAAAGAATGCCTTCGTACTTGGAGATTCAGTACAGACGC
GCGAGCGTGCTCTCACTCTGCAAGTCCTGGATGAGTGTTACAAACTGGCC
AGGTGACATCTCGACAAGAGGAGTGTG
FMO03045.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:10:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| AMPdeam-RC | 3216 | CG32626-RC | 921..2104 | 35..1205 | 5175 | 96.7 | Plus |
| AMPdeam-RJ | 2620 | CG32626-RJ | 393..1508 | 103..1205 | 4835 | 96.5 | Plus |
| AMPdeam-RG | 2611 | CG32626-RG | 393..1499 | 103..1205 | 4690 | 95.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:10:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 13832237..13832673 | 1094..661 | 1915 | 97.5 | Minus |
| X | 23542271 | X | 13834815..13835150 | 437..102 | 1680 | 100 | Minus |
| X | 23542271 | X | 13832903..13833032 | 566..437 | 650 | 100 | Minus |
| X | 23542271 | X | 13832745..13832840 | 661..566 | 480 | 100 | Minus |
| X | 23542271 | X | 13835377..13835445 | 103..35 | 345 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:10:08 has no hits.
FMO03045.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:00:32 Download gff for
FMO03045.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32626-RC | 913..1983 | 27..1094 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:05:04 Download gff for
FMO03045.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32626-RC | 913..1983 | 27..1094 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:40:15 Download gff for
FMO03045.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| AMPdeam-RC | 913..1983 | 27..1094 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:40:15 Download gff for
FMO03045.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 13832904..13833031 | 438..565 | 100 | <- | Minus |
| X | 13834815..13835149 | 103..437 | 100 | <- | Minus |
| X | 13835378..13835449 | 27..102 | 94 | | Minus |
| X | 13832237..13832673 | 661..1094 | 97 | <- | Minus |
| X | 13832746..13832840 | 566..660 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:05:04 Download gff for
FMO03045.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 13726270..13726706 | 661..1094 | 97 | <- | Minus |
| arm_X | 13726779..13726873 | 566..660 | 100 | <- | Minus |
| arm_X | 13726937..13727064 | 438..565 | 100 | <- | Minus |
| arm_X | 13728848..13729182 | 103..437 | 100 | <- | Minus |
| arm_X | 13729411..13729482 | 27..102 | 94 | | Minus |
