FMO03046.5prime Sequence
1220 bp (1040 high quality bases) assembled on 2008-07-09
> FMO03046.5prime
TCGTATAGCATACATTATACGAAGTTATCAGTCGACATGCAGCGAAACAT
GATGATCGCCTTCGTGGGCATCTGGTGCATTTTGGCCAGCATTGGTGTGG
AGCCTGCGGCGGGCTTGGCCAATTGCCCGCCCGGCTGTCAGTGCGATGAT
AATACCCTGGTGGTACAATGTGGCGAGGGCCAGCTGGACGTGCTGCCCAT
TGCTCTGAATCCATCCATCCAGCGACTGGTGATTAAGAGCAACAAGATCA
AGACCATCGACTCGTCCATCCAGTTCTACGCGGAGCTGACCTTCCTCGAT
CTGTCCTCGAATCACCTGATGACCATTCCGCAGCGCACCTTCGCCTATCA
GAAGAAGCTGCAGGAGGTGCATCTGAATCACAACAAGATTGGGCAGATCA
GCAATAAGACCTTCATTGGTCTGTCGGCAGTTACTGTTCTGAATCTGCGT
GGTAACCAAATCTCGGAACTTCACCAGGGCACCTTTACTCCTCTCCTGAA
GATCGAGGAGCTGAATCTGGGCGAGAATCGCATCGGCTATCTGGATCCCA
AGGCTTTCGATGGACTCTCCCAGTTGCGCATCCTTTATCTGGATGATAAT
GCCTTGACCACCGTTCCCGATCCCGTGATCTTCCAAGCCATGCCCAGTCT
GGCTGAGCTGTTCCTTGGAATGAACACCCTGCAGAGCATTCAGGCTGATG
CCTTCCAGGACCTGAAAGGACTTACTCGCCTGGAACTCAAGGGTGCCAGT
CTACGCAACATCTCCCACGACAGCTTCCTCGGCTTGCAGGAGTTGCGCAT
TCTTGATCTTTCCGATAATCGTCTGGATCGCATTCCCTCCGTGGGTCTCA
GCAAGCTGGTTTCGTCTGGAGCAGCTGTCCCTGGGTCAAAACGATTTCGA
GGTGATCAGCGAAGCCGCATTCATGGGCCTGAAGCACCTTAAACGCCTGG
AGGTGAATGGAGCTCTAGGCTGAAGCGTGTCAATGACCGGAGACTTCAGC
GACATGGTAACCTGGAGTATCTGAATTTATCGTCAACAAATTGCTTTTGA
GGTTCAAGACGGTGCCCTCATGAGCTGTCCAATTGAAGCATGTTGTTCTT
CAAGCATGCCTGACTTTCTGACAATGGTCTGTCCGTGAAGATCTTCGAAC
TCTGGAACTTTCCAAATCTGTCTGCACTGCGGTAGTGTGACGTCCAATCT
GTCGTGTGCCCCAAAAGAGT
FMO03046.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:27:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| trn-RB | 3365 | CG11280-RB | 586..1725 | 37..1163 | 5050 | 97.1 | Plus |
| trn-RA | 3365 | CG11280-RA | 586..1725 | 37..1163 | 5050 | 97.1 | Plus |
| caps-RE | 4841 | CG11282-RE | 1001..1424 | 111..534 | 545 | 75.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:27:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 13115298..13116364 | 37..1099 | 4825 | 98.5 | Plus |
| 3L | 28110227 | 3L | 13275802..13276225 | 111..534 | 545 | 75.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:27:08 has no hits.
FMO03046.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:02:02 Download gff for
FMO03046.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| trn-RA | 584..1670 | 37..1116 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:41:49 Download gff for
FMO03046.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| trn-RA | 586..1672 | 37..1116 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:01:42 Download gff for
FMO03046.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| trn-RA | 586..1672 | 37..1116 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:01:42 Download gff for
FMO03046.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 13115298..13116384 | 37..1116 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:41:49 Download gff for
FMO03046.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 13108398..13109484 | 37..1116 | 98 | | Plus |
