FMO03047.5prime Sequence
1226 bp (1020 high quality bases) assembled on 2008-07-09
> FMO03047.5prime
TCGTATAGCATACATTATACGAAGTTATCAGTCGACATGGCTGGCCAACA
GCTCGTGGTCTTGATCCCCAAAATAAATCCCAACTCCCCGAAGACCCTAT
ACGACCTGTCGCTGCAGGCCCTCATCGGGAGTATGAACACCAAGATACCG
GCGCTGGACAGGATCAGTCGACTGGCTGAGCTGCCACGCAACTTGCTCAT
CGATGTTTACGAAATGATGTCACAGCAGGAGTCCTTGAAGGACACGCTGC
TGGAGGAGCTGGCCCAGCTTGAGGTATTCGCTCGACTCGTTCGCTATCCA
TTTGCTCGCAGTCAATTGCTGCGCATAATGGCCTCACTAATGGCCAGCCA
AAAGATGCTGGCCAAAAGACTCAGCGAGAACTATGTGTCGCGCTATGAGG
TGGTGGCCGGTCACGAAGAAGAGGAACTGGAGTCGAGTATGGATACAGTT
GAGGATCGCTCAACGGAGTTCAGTTCACTGTATACCTACGATTCCGAATC
TACAAATGCAGACAGCATCAGTGATTTTAATGACGAATTCAGTGCTGATA
TCGGAAGCATAGTAGGTCTCCCACACCGGAGAGCAACACAGGAGGAACTC
GATGCGATCAATGATTCTGGCCTCGAGGAGCTGTCCGCCGTTGAGCTGCA
GGTCATAGATCTGGGCCTGCGCCTCGGATCGTTCCTCTCGGAGGCTGGAT
GGATGCAGGAGAGCATTACCGTGCTGGCATGCCTTAATGTAAGACTGAAG
GATCTGCCGACCCACAAACACTGGTTGCAGTTTCGACTCGACTGCCTGCA
GCGCCTTTTGTATGCCGAATCGGCCCATTGCAACTTCAAGGAGGCAGAGA
AAACCTACGCGGAATTGATGGGTCTGACAATGGCTCAATAAGAGCGTGCC
AAACCAGCTGGTGGCCATAACCTACAGTCAGATTTCGGGCATTTACTTTG
CCCGCAATGAGTACAAGAACAGTCATTTGGTGGAGCGGTCTCGCATGCGA
TTTTTAAAGGATATGCGAATCCACGCACCATCATCGATGTTCTGCGCAAG
CCGCGAAGGCCTTTGTCGTTTAGCGGACTTTGCCGGTCATCTGCTTCATC
TGCCAAGCGTGCAACGCGCACCGCATACTTTGGCCACGCACAGAATACCG
GGCAGTGCACTTCTGACTCGGATTTCTATCTCACTGGAATCGGGTTCAGC
TGTAAATTCTTATTCGAGCAGACCAT
FMO03047.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:16:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pat1-RC | 3659 | CG10695-RC | 365..1520 | 33..1175 | 5080 | 96.9 | Plus |
| Pat1-RB | 3389 | CG10695-RB | 365..1520 | 33..1175 | 5080 | 96.9 | Plus |
| Pat1-RA | 3716 | CG10695-RA | 365..1520 | 33..1175 | 5080 | 96.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:16:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 6593360..6593947 | 216..803 | 2940 | 100 | Plus |
| X | 23542271 | X | 6591580..6591763 | 33..216 | 905 | 99.5 | Plus |
| X | 23542271 | X | 6594088..6594313 | 803..1025 | 875 | 96.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:16:40 has no hits.
FMO03047.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:04:46 Download gff for
FMO03047.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pat1-RA | 360..1419 | 29..1084 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:42:43 Download gff for
FMO03047.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pat1-RA | 362..1421 | 29..1084 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:00:22 Download gff for
FMO03047.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pat1-RA | 362..1421 | 29..1084 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:00:22 Download gff for
FMO03047.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 6591577..6591763 | 29..216 | 98 | -> | Plus |
| X | 6593361..6593947 | 217..803 | 100 | -> | Plus |
| X | 6594089..6594313 | 804..1025 | 96 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:42:43 Download gff for
FMO03047.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 6485610..6485796 | 29..216 | 98 | -> | Plus |
| arm_X | 6487394..6487980 | 217..803 | 100 | -> | Plus |
| arm_X | 6488122..6488346 | 804..1025 | 96 | -> | Plus |
