FMO03048.5prime Sequence
1244 bp (1028 high quality bases) assembled on 2008-07-09
> FMO03048.5prime
CGTATAGCATACATAAAACGAAGTTATCAGTCGACATGCGAAGAAGAGGA
AGCACTTGCAGCGCACAACAACCACAGCAGCGGCCACACAAACAGCAGCA
GCAGCAGCAGCAGCAAAATCAAAGGTTAATCCCCGGCCAACGCTGTTCGC
TGCTAATGTTGCTAATTGTTGGCCAAGCAGTTTACGCTTCTGCCGGCAGT
GAGATAATCGCAAATCGTTCGGCTTCAGCTGGCGAATCGTTGATAATGCT
GTCGAATTTCACCGTTGCCACGCCGCCTCCCGCCCCAAGATTCACCAGTC
CCTTTCGGGAGCAGGATGTGGCTGAGGGGGAGGAGTTGGCGGGTGGAGGG
CAGGTCGATTGGTTGGACGAGCAGCATCCGCTGACCATTTCCCGACCGCC
AAGAGCAGGACGCAGCGAGCGGCAGGCAGAAGAGGATCAGGTGGACCGCT
GTCGTCTCTTTGTCGAGGGGGATCCCACCAAGAATGAGCTGTACAGCCCC
GAGTATCCCAACTTGTATCCGAAGAACATCAACTGCACCCGGGTGATAAC
AGCGCCAAAGGGACAAATCATACGCCTGGACTTTCGCAACTCGTTTAATA
TCGAGGCCAAGGAGGGGTGCAAATTTGATTTTCTCGAAATACGAGATGGC
CAGTACGGTTTCTCTACGCTGATTGGCAAGTTCTGCGGCACCGACTTTCC
GCCGGAGATCACCTCGAAGGAGCGGTATTTGTGGCTTCATTTCCACTCCG
ACGAGACCATCGAGTACACCGGATTCAGTGCGGTCTATGAGTATCTGGAC
AGGAGTCGGGATGCGCCCAGCACCGATCTCAACTGCACCATCGATAAAGG
GCGGCTTCGAGGGCTTCATCAACTCCACGGATGTTCCGGCCGAGATCTGG
GAGCAGGTCAATCGCAATAGATCGCGCTTGGACTGCATCTGGCGCATTCA
GGTCAAGGAGAATTGGAAGATATTTCTCAGGTTTCTGGACTTCAGCTGAG
CAGGCGAACGATTGTCAACCACCTCCTGGATATATTCCCGGAACAGACGG
TGATGCACTGAGGTAAGACCTTTTGCGGTCAGCTGGCAAAGATACGACGC
GAATCAATATCCCTGACTTGGCCCTTTCAACCAAACCACGCGAATTACTC
GACATTAGACATCTGTTCCGGTCTCGGAACGTGAACTGCCTGACTAGGAC
AGTCCAATGCGAGACCGCACCTGTCATAAAAAGATATGTGAAAG
FMO03048.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:23:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Neto-RB | 6903 | CG44328-RB | 597..1655 | 36..1087 | 4965 | 98.5 | Plus |
| Neto-RA | 3362 | CG44328-RA | 597..1655 | 36..1087 | 4965 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:23:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 13495840..13496206 | 186..552 | 1835 | 100 | Plus |
| X | 23542271 | X | 13500494..13500823 | 639..969 | 1510 | 99.1 | Plus |
| X | 23542271 | X | 13483136..13483286 | 36..186 | 755 | 100 | Plus |
| X | 23542271 | X | 13499794..13499883 | 549..638 | 450 | 100 | Plus |
| X | 23542271 | X | 13500949..13501041 | 968..1056 | 225 | 90.3 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:23:24 has no hits.
FMO03048.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2010-07-30 09:27:11 Download gff for
FMO03048.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32635-RA | 585..1656 | 27..1092 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:01:35 Download gff for
FMO03048.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Neto-RA | 588..1659 | 27..1092 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:13:02 Download gff for
FMO03048.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Neto-RA | 588..1659 | 27..1092 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:13:02 Download gff for
FMO03048.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 13483127..13483286 | 27..186 | 97 | -> | Plus |
| X | 13495841..13496206 | 187..552 | 100 | -> | Plus |
| X | 13499798..13499883 | 553..638 | 100 | -> | Plus |
| X | 13500494..13500823 | 639..969 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:01:35 Download gff for
FMO03048.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 13377160..13377319 | 27..186 | 97 | -> | Plus |
| arm_X | 13389874..13390239 | 187..552 | 100 | -> | Plus |
| arm_X | 13393831..13393916 | 553..638 | 100 | -> | Plus |
| arm_X | 13394527..13394856 | 639..969 | 99 | -> | Plus |
