FMO03049.5prime Sequence
1266 bp (917 high quality bases) assembled on 2008-07-09
> FMO03049.5prime
CGTATAGCATACATTATACGAAGTTATCAGTCGACATGGAGCACGCCGGC
GCGCCAATCTCCACGTCCGCCTCGAACATAGCCACCGTGCTGGAGGACGG
CGAGAACCAGCAGCTGCCGCCCTTGACGGGATCGGGACCTAGTCGCCAGA
GATCTCTGAGGGATCGGCTCAAGGACGGCATCACCGGCAGCTTCTCCTGG
CAGAGCAAATCGCGCAGCGTGGATCACGGCCTTGCGGCTCCATTCGACTT
GGACTCGCTCCGCTCCAAAGTGGAGCAGCGCTTCGAGAGCGTCGACAAAT
TATCAAGGCAAAAGTCTTCATTGCCCACCATACCCACCATTTCCTACACC
GTGGGCAATCGCGACACCCTGACCTCCGTGGCCGCCCGGTTCGACACCAC
GCCCTCGGAGCTGACCCACCTCAACCGGCTGAACAGCTCCTTCATCTATC
CGGGCCAGCAGCTGCTGGTGCCGGACAAGAGCGCCAAGGACGACGCCTCC
AGCAGCTCCACCCACGACGCGGACGGTGCCAGCCTGTCCGGCAAATCGAG
TCCGGTCGAGCGCAAGTTGTCCGGCGACGAGAGCCGCGAGAAAGACATAC
TCGAGGGCCTGCGCCCCGGATCCCCAAAACCGGGACACATCGAGCGCGTG
GGCGGCAGTAGCCAGCAGCAGCAGGCGGAGGAGGAGGCCAACAAAGCGAC
GATCCGGTGATCACACAGCGCTTCCTCAAGATCAATGTGCGCCACATCAC
GGACGGACAGGGCGTGGTGGGCGGCGTCCTGCTGGTCACGCCCAACGCCG
TTATGTTCGATCCCACGTCAGCGATCCCCTGGTCATCGAGCACGGCCCGG
AGAGCTACGGCGTCATTGCGCCCATGGAGTGGTGGTCAACGCCCGCCATC
CTTCTCACGACATTGCGCCACACTGCCGAGTGGGCGGAGGAGCAAGTCAG
GGTCCTGAACCTCCGGCCTCCGGGACGACGCGGAAAAACCCGGAAATCTA
CTATCCCAAGCCAGTATTAATCGAAGAAAACTCCAAGGGAGCTACCCGAG
CACCATCGCTGCTGGGCGAAAACGGTAATAGCGCTTAGATGCAGAAATAG
GGTCGCTTTGAATCGCTGAACAACAAAGAGTTCGCTTGTGCTCCAACATT
GAAGCGCATTGGCAACCGATCCAAAGCCCTCGAACCGGAACGGTTGGAGA
GACTCTTCTATGGAACCAAAGATAGCGCTTGAACTGCAGCATCTCTCTTA
GACGATGTAGTAGACT
FMO03049.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:35:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mtd-RZ | 3738 | CG32464-RZ | 1592..2777 | 35..1229 | 4965 | 95.7 | Plus |
| mtd-RX | 5976 | CG32464-RX | 1592..2777 | 35..1229 | 4965 | 95.7 | Plus |
| mtd-RW | 6314 | CG32464-RW | 1954..3139 | 35..1229 | 4965 | 95.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:35:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5296147..5296637 | 1091..593 | 1540 | 93.1 | Minus |
| 3R | 32079331 | 3R | 5298202..5298489 | 594..307 | 1440 | 100 | Minus |
| 3R | 32079331 | 3R | 5334404..5334572 | 203..35 | 845 | 100 | Minus |
| 3R | 32079331 | 3R | 5299469..5299573 | 307..203 | 525 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:35:24 has no hits.
FMO03049.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2010-07-30 09:27:26 Download gff for
FMO03049.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(3)82Fd-RD | 314..1398 | 32..1124 | 97 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:05:19 Download gff for
FMO03049.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mtd-RW | 1950..3034 | 32..1124 | 97 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:19:09 Download gff for
FMO03049.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mtd-RW | 1950..3034 | 32..1124 | 97 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:19:09 Download gff for
FMO03049.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5296147..5296635 | 595..1091 | 94 | <- | Minus |
| 3R | 5298202..5298489 | 307..594 | 100 | <- | Minus |
| 3R | 5299470..5299573 | 203..306 | 100 | <- | Minus |
| 3R | 5334405..5334576 | 32..202 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:05:19 Download gff for
FMO03049.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1160127..1160298 | 32..202 | 99 | | Minus |
| arm_3R | 1121869..1122357 | 595..1091 | 94 | <- | Minus |
| arm_3R | 1123924..1124211 | 307..594 | 100 | <- | Minus |
| arm_3R | 1125192..1125295 | 203..306 | 100 | <- | Minus |
