FMO03050.5prime Sequence
1290 bp (1006 high quality bases) assembled on 2008-07-09
> FMO03050.5prime
CGTATAGCATACATTATACGAAGTTATCAGTCGACATGCTGCTGGTGCGT
CAGCTATTCGGGGCTTCGGCCAACTCCTGGGCACGCGCCCTCATCATATT
CGTACTGGCCTGGATCGGGTTGGTCTACGTGTTCGTGGTCAAGCTGACCA
ATACTCAGGGCCAGCAGGCGGCCGGGGAGAGTGAGCTGAACGCCCGTCGC
ATATCACAGGCGCTCCAGATGCTGGAGCACACGAGACAGCGCAATGAGGA
GCTTAAACAGCTCATCGACGAGTTGATGAGTGACCAACTGGACAAGCAGA
GCGCAATGAAACTGGTGCAAAGGCTGGAGAACGATGCGCTAAATCCAAAG
CTGGCGCCCGAGGTCGCCGGCCCGGAACCAGAATCCATGTTCGAGTCCGC
CCCCGCTGATCTGCGCGGTTGGAATAATGTGGCCGAGGGAGCGCCCAATG
ATCTGGAGGCCGGTGTTCCGGATCATGGCGAATTCGAGCCCAGCCTAGAG
TACGAGTTCACGCGCAGACGCATCCAGACGAACATCGGTGAGATCTGGAA
TTTCTTCAGCAGTGAACTGGGCAAAGTGCGTAAGGCAGTGGCCGCCGGCC
ATGCGAGTGCCGATTTGGAGGAGTCCATTAACCAGGTGCTGCTCCAAGGC
GCCGAGCACAAGCGCTCCCTGCTGAGCGATATGGAGCGGATGCGTCAGTC
CGATGGCTACGAGGCCTGGCGACACAAGGAGGCACGGGATTTGAGCGATT
TGGTACAGCGGCGCCTGCACCATCTACAGAATCCCAGTGATTGCCCAGAA
TGCTCGCAAGCTGGTCTGTAAGCTCAAACAAAGGGCTGTGGCTACGGCTG
CCAACTGCACCATGTGGTGTATTGCTTTATAGTGGCCTACGCCACCGAGC
GGAACGCTCATCTTAAAATCCCGCGGATGGCGGTATCAAAAGGCCGGCTT
GGGAAGGAGGTGTTCCAACCGGTGTCCAACAGCTGCCATGATGCCGGCCA
CCGCCACCACACACAATTGGGCCCGCCAGCCCGAAACACCCAAGGTGCCT
GGTGTTTGCCCATCCATTGAACCTCGCCTGAATGCCCGAGAACCGCCCGT
ACCCTGTCCCGCCTCCGCCCGATCCCGAAGGATCCTGGGCCGCCCGAAGA
ACTTAAGCCGTCTCTGGCAATGGGAAACCCCCATCTGTTTTGGGTGGAGG
GTCCGTTCCCCGTAAGAATATTGGGTCTCCCGAACCCGCCCAACCAAACG
CAAACCCCGTGAAATTTTTCCTCCTTAACCCACTCCCTCT
FMO03050.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:41:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| FucT6-RA | 2795 | CG2448-RA | 504..1526 | 35..1070 | 4720 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:41:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 11708249..11708796 | 827..279 | 2695 | 99.8 | Minus |
| X | 23542271 | X | 11709203..11709448 | 280..35 | 1230 | 100 | Minus |
| X | 23542271 | X | 11707953..11708137 | 1020..832 | 690 | 94.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:41:24 has no hits.
FMO03050.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:02:06 Download gff for
FMO03050.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| FucT6-RA | 500..1488 | 32..1028 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:46:49 Download gff for
FMO03050.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| FucT6-RA | 501..1489 | 32..1028 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:26:26 Download gff for
FMO03050.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| FucT6-RA | 501..1489 | 32..1028 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:26:26 Download gff for
FMO03050.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 11707946..11708135 | 834..1028 | 93 | <- | Minus |
| X | 11708245..11708794 | 281..833 | 99 | <- | Minus |
| X | 11709203..11709453 | 30..280 | 99 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:46:49 Download gff for
FMO03050.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 11601979..11602168 | 834..1028 | 93 | <- | Minus |
| arm_X | 11602278..11602827 | 281..833 | 99 | <- | Minus |
| arm_X | 11603236..11603486 | 30..280 | 99 | -> | Minus |
