FMO03051.5prime Sequence
1099 bp (679 high quality bases) assembled on 2008-07-09
> FMO03051.5prime
TATAGCATACATTATACGAAGTTATCAGTCGACATGATGTCAAAGGAAAG
CCTGGAAACTTGCGAACTTACTCTGCCCGTGGGCCAAATTAAGGGCGTCA
AACGCCTTAGTCTTTACGACGATCCCTACTTCAGCTTCGAGAAAATCCCC
TTTGCGAAGCCCCCGTTGGGAGAACTGAGATTTAGGGCCCCCGTGCCAGC
AGATCCGTGGAGCGGCGTTCTGGACTGCACCCACTATGCAAAGAAGCCAA
CCCAGAGGGGCTTACTGACCCGTGAAATCGAAGGCGGCGAGGATTGTCTG
TATCTGAACGTCTATTCCAAGCAGCTGAAAAGTGAGAAGCCATTGCCGGT
GATGGTGTACATTTATGGCGGGGCCTTCACCGTAGGAGAGGCCACCCGCG
AATTGTACGGCCCGGACTATTTTATGACCAAAGATGTTGTTCTTGTGACG
CTTAACTATCGCGTGGATTGTTTGGGATTCCTATCGCTCAAGGACCCGAG
TCTGAAAGTTCCCGGAAACGCAGGACTCAAGGGACCAAGTGCTAGCTCTC
AAGTGGGTCAAGCAGTACATCTCCAACTTCAATGGGCGATGATAGTAATA
TTACGGTATTCGGAGAGAGCGCCGGAGGTTGCTCCACCCACTTCATGATG
TGTACGGAACAGACCAGGGGACTGTTTCACAAGGGCCATTCCCATGTCAG
GAGCAGTGCACAACTACTGGCCAATAATCCGGCCAGAAGACTTTTGCCTT
CGCCTGGCTCACAAATGGTTTCACTGGCGAAAATGACGACTCCAAGGTAC
TGGATATCTTCCAAGGAGTTCCGGGCTAGAGATTTGGTGAACCATTATTT
GCTACCCCCGACAACGGAGGGACGTCCTGCTTCTCCCCTTGGACCCCTGT
GGAAGAATATGGGGGTGAGGAATTGCGGGCGCCAACCCGGAAGAAGAGAT
GCGCCGGAAAGGGCGGACCAACATTTTCCAGTCATGGTGGGTGGGAACGA
CTTGCGAAGGTGCTTTTCTATGCATTTCCACGCTGGGCCGCCCAATTCAA
AGGCATTGGATATACCCTATAGCCAGGAATCCAAACAAGGCTGGGGTGC
FMO03051.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:29:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| alpha-Est5-RA | 1754 | CG1089-RA | 91..1117 | 34..1062 | 3920 | 93.6 | Plus |
| alpha-Est5-RB | 2490 | CG1089-RB | 91..1120 | 34..1062 | 3880 | 93.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:29:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 7535159..7535536 | 854..475 | 1355 | 94.5 | Minus |
| 3R | 32079331 | 3R | 7535946..7536221 | 324..49 | 1350 | 99.3 | Minus |
| 3R | 32079331 | 3R | 7535732..7535885 | 476..323 | 770 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 22:29:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Doc3-element | 4740 | Doc3-element DOC3 4740bp | 1063..1101 | 312..350 | 114 | 76.9 | Plus |
FMO03051.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:02:07 Download gff for
FMO03051.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| alpha-Est5-RA | 226..1044 | 34..854 | 97 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:03:25 Download gff for
FMO03051.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| alpha-Est5-RA | 91..909 | 34..854 | 97 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:15:55 Download gff for
FMO03051.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| alpha-Est5-RA | 91..909 | 34..854 | 97 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:15:55 Download gff for
FMO03051.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 7535733..7535883 | 325..475 | 100 | <- | Minus |
| 3R | 7535946..7536219 | 51..324 | 99 | <- | Minus |
| 3R | 7536284..7536300 | 34..50 | 100 | | Minus |
| 3R | 7535159..7535535 | 476..854 | 96 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:03:25 Download gff for
FMO03051.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 3360881..3361257 | 476..854 | 96 | <- | Minus |
| arm_3R | 3361455..3361605 | 325..475 | 100 | <- | Minus |
| arm_3R | 3361668..3361941 | 51..324 | 99 | <- | Minus |
| arm_3R | 3362006..3362022 | 34..50 | 100 | | Minus |
