FMO03053.5prime Sequence
1236 bp (1047 high quality bases) assembled on 2008-07-09
> FMO03053.5prime
TTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGTCCCACAAAT
CTTGCGTGGAACTGAGCGAAATTCGAAAATTGGATAAAATAGTGCAGCAA
TGCGAGCTGTACATGTCCAACAACAATATTAACGATAATGCGGCCAAGAA
ACCGCCTGTGAAGGAATTCAAGCGCAATTGCCCTGCAAAATCGAACAAAT
TTGTGGAGAGGGAACTCTTCTCGCTCATGTGCAACCTGAACAAGATTGAA
AAGAAGCAGGTTTTCGTTTCAGATATCCTGATTAACGCCAGCATGTTCGA
CGACAAGAAGGAGAGTTTGGCGCGGTTTCCGAAAAACGTGTCCGACCACA
ACACTCTGGTGTACCACAAATTCCTGAGGACTCGACCCACTAACGATGAT
GAAGCCCTAAAGCTGAAGGCTGGTGGAAAATCGAAGGAGAGGCCAGGCAC
GAAAATCACGGCAGATTGCTTCTTTTCGCCTCTTCTATTCAAAATCAACA
ACAAAAGGGAGTGCCTGAAAAAAGTGAAGCCCATGAAGGGGGAAAATGCT
GTCGAAACCAATGGTATCCCACTCGAATCCAAGCCAAGTCAGCACAAAAA
GCAGAAAAGTTTCAAGAAATGCATTAAGTGCGACAAGAAGAAGCTGTACA
TTAAGAACTATCAGGTGTCCGCCCGGCGGGAATGCGATCTCCTCTGCTCG
TATGATCCCTTGCGTAAAAATAACGCCGACCTCTTCCAGACCCACAAAGG
CACTTCTTACGAGTGCATGTTCAAGAACCTCAAATACAACCAGGCCGAAA
AGCCGACGGACAACGTGATGGGGAACTCCTACGACGACATGCTGGACAAG
GAGGCTCTGCTCGGATCAAAAAGCGAGCCGAAAGGGGCAGGATCCCAATG
ACATGATTACTTCCTGGGCGGAAACATACTGCTGGACAGAAGTTGCAGAA
TAACTACTATCACAAGTGGAACCCTTCTGCACTACTCGCCTTTAAGCTGT
GTGGGAATGGAAAATATTGATCCTGGTGATGTACACGGCCATCTTCACGC
GTACGTGGCTGCCTTTTGCTGGGGAACAGGAATAACCAGCGGCGAAAGCC
AATAAATCACTCCGATCATGTCATCATCGAATTGAATTGTGGACGTACCT
CAATCGTGAAATATAAAATAACCTCCGAACGACTTGTCTACTTGCAAGAA
ACAAAGGTTATTCCCCTATCCGGGAGCAGCGAGATG
FMO03053.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:49:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sei-RC | 3197 | CG3182-RC | 535..1706 | 38..1196 | 5105 | 96.8 | Plus |
| sei-RB | 2752 | CG3182-RB | 90..1261 | 38..1196 | 5105 | 96.8 | Plus |
| sei-RA | 2716 | CG3182-RA | 54..1225 | 38..1196 | 5105 | 96.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:49:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24049431..24050297 | 38..905 | 4290 | 99.9 | Plus |
| 2R | 25286936 | 2R | 24050371..24050528 | 913..1067 | 505 | 93.7 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:49:45 has no hits.
FMO03053.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:04:50 Download gff for
FMO03053.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sei-RB | 88..1218 | 38..1158 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:05:14 Download gff for
FMO03053.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sei-RA | 54..1184 | 38..1158 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:27:12 Download gff for
FMO03053.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sei-RA | 54..1184 | 38..1158 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:27:12 Download gff for
FMO03053.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24049431..24050297 | 38..905 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:05:14 Download gff for
FMO03053.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19936954..19937820 | 38..905 | 99 | -> | Plus |
