FMO03054.5prime Sequence
1215 bp (914 high quality bases) assembled on 2008-07-09
> FMO03054.5prime
TCGTATAGCATACATTATACGAAGTTATCAGTCGACATGAGTGCTTCCGG
GAAGAGTCTTCTGGGCCTGTGGCTCTACAGGAGTGGCGAACAGGAGTGGG
CCGTCAAGCAGGGAAGTCCCTTGCACCAGCTTAAAAAGGATTCCACCACA
TCCGGCTCCAGCTCGCATCCAAGTCTCGGCAGAAACGCCTCCGCTCCGCC
GGAGCCGCCAAGGCTGGCCATCGGTGGTGGTGGTCAGGATAATGGAAGAC
AGCATTCCCCTGGCGAACGCATCTCCATCATTTTCACCCTGCGTAACCAG
GTGGGAAACCTGGCCAGAGCCCTCCAGGTTTTCCAGGAGCTGGGCATCAA
TGTGCTGCATTTGGAGCTATCGCCGCTTGAGATGGCCACCAACCAGGCGG
ATGTCCTCGTGGATGTGGAGTGCGATCAGCGTCGACTCGACCAGGTGGTC
AAGATGCTCAACCGAGAGGTGGCCTCTGTGAACTACACTTCCGTGAACAC
GCAGGGATTGGCCAGGGCTCCGTCGCTATCGGCGTGCTCCAGTTTTGACT
TCAGCGATATGGTGTGGTTTCCGCGAAAGATTTCCGATTTGGACGAGGCG
CAGAATGTGCTCATGTACGGCTCGGAGTTGGATGCCGACCATCCAGGATT
CAAGGACCCCGTGTACCGTAAACGGCGAGAGCAATTCTCGGCCATTGCCA
ACAACTTCAAGCATGGCAACCCCATTCCACGTGTGCAATACACACCTGAG
GAAGTGAAAACCTGGGGCACCGTTTCTTGGAGCTCCACCGCCTCTACGTG
TTGCATGCTGTGCCTGAGTACATGGACAACTGGCCGGAGCTGGAGAAGTA
CTGTGGCTACCGCGAGGACAACGTTCCCCAGTTGCAAGATGTGAGTGTCT
ATCTCAAGCGCAAGACCGGATCCCAGCTCAGGCCTGTGGCGGTTACTCTC
CCAAGGACTTCATTTCGGACTCGCCTACGGCGTGTTCCACTGCACCAGTA
CATTCGAACATCCCTCGGATTCAATCTACACTCTGATCGGACTGTGCACT
GAGCTAACTGGGACCAATGCCTGCTGGCACTCCAGTTTGCCAGTTGCAAG
AAAATGCCCTTGCATCTTGGCGGCACGCACGGATTCCGGAACTGCTACAC
CCTCCACTCTTCTTGATGGCCTTGCAATCGGCGGAGCGACCATTAAGGGC
GATATAGAAAACTGC
FMO03054.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:26:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Trh-RA | 2183 | CG9122-RA | 84..1147 | 37..1088 | 4605 | 96.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:26:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 1192580..1193090 | 547..37 | 2555 | 100 | Minus |
| 3L | 28110227 | 3L | 1191834..1192097 | 1031..773 | 855 | 91.7 | Minus |
| 3L | 28110227 | 3L | 1192308..1192478 | 713..543 | 795 | 97.7 | Minus |
| 3L | 28110227 | 3L | 1192183..1192234 | 765..714 | 245 | 98.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:26:37 has no hits.
FMO03054.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:00:34 Download gff for
FMO03054.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Trh-RA | 75..1080 | 29..1031 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:41:29 Download gff for
FMO03054.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Trh-RA | 79..1084 | 29..1031 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:01:26 Download gff for
FMO03054.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Trh-RA | 79..1084 | 29..1031 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:01:26 Download gff for
FMO03054.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 1191834..1192106 | 765..1031 | 93 | <- | Minus |
| 3L | 1192184..1192234 | 714..764 | 98 | <- | Minus |
| 3L | 1192308..1192473 | 548..713 | 98 | <- | Minus |
| 3L | 1192580..1193095 | 29..547 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:41:29 Download gff for
FMO03054.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 1191834..1192106 | 765..1031 | 93 | <- | Minus |
| arm_3L | 1192184..1192234 | 714..764 | 98 | <- | Minus |
| arm_3L | 1192308..1192473 | 548..713 | 98 | <- | Minus |
| arm_3L | 1192580..1193095 | 29..547 | 99 | | Minus |
