FMO03057.5prime Sequence
1260 bp (1024 high quality bases) assembled on 2008-07-09
> FMO03057.5prime
TCGTATAGCATACATTATACGAAGTTATCAGTCGACATGGAGGTGCAAGT
GGGATGGCCAAAGCTGATCAAGATGGGAGCCCAGTTGGTTGGCCACAAGG
TGCAACAGTACCGGCTCTCCACGGGTCACACAGTGATTTTGGACACCAAG
TACGGACAGGTGCGCGGACTCCAAAGGAAGACGGTCTACGACAAGGAGCC
GTACTTTGCCTTCGAGGGCATTCCGTACGCCAAGCCCCCCGTGGGTGACC
TCCGATTCAGGGCTCCTCAGCCACCGGAACCCTGGCAAGGAGTGCTCAAC
TGCACTACCAATCGATCCAAGCCCATGCAGAGGAACATGCTCCTGGGAAT
TGTCGAGGGCAGTGAGGATTGTTTGCATTTGAACGTTTATGTCAAAGCCT
TGAAGTCGGAAAAACCGCTGCCCGTAATTGTGTGGATTTACGGAGGTGGT
TTCCAAAAGGGTGAGGCCTCCAGGGATATTTACAGTCCGGATTACTTCAT
GAAGAAGCCAGTGGTATTCGTCGCTATCAACTACAGGTTGGCAGCACTAG
GATTTCTCAGTCTAAAGGACCCGAAGCTGGATGTTCCTGGCAATGCGGGA
CTTAAGGACCAAGTAATGGCTCTGCGTTGGATAAGTCAGAACATCGCCCA
CTTCAATGGCGACCCCAACAACATCACATTGATGGGAGAAAGTGCAGGAT
CGGCTTCTGTCCACGTCATGATGACCACAGAGCAAACACGTGGTCTCTTC
CATAAGGCTATCATGCAATCGGGATGTGCCCTCAGCGAATGGGTGGAGAG
TCCGGATAACAATTGGGCATTCCGGCTGGCCCAGAATCTGGGCTACAAGG
GCGACGAGAAGGATGCGGATGTACTAAGCTTTCTTAGTAAGGTTTGCGCA
CGCCAGATTAGCGGCTATTGATCAGGACGTTATCAATTTGGACGAGTGCG
AAGCTTCCTACTATTCCGCATTTGGTCCTGTGATAGAACCCTACGAAACG
GACCACTGTGTGGTGCCCAAAAAGGCACATGATCTGTTGTCCGAAGCGTG
GGGCAACGAACATTCCCGGTTATTGTCGGGGAAATTCTTTCGAGGGCTTT
TTTCTTACCAACTAATAGAAAAGATCCTGGTCTTGAAAACATTTCCACAC
ATCCTGCTAAGGAAAGTTAGAGATACTAGAGCTACCTGTAGGCTAAGAAT
CTACTGGGTGCGGGCTACTTAGTCGCTCTTACTCTTCAACCAAGGAGATG
CGACTGGCTC
FMO03057.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:42:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| alpha-Est2-RB | 2141 | CG2505-RB | 288..1427 | 36..1173 | 5240 | 97.9 | Plus |
| alpha-Est2-RA | 1958 | CG2505-RA | 105..1244 | 36..1173 | 5240 | 97.9 | Plus |
| alpha-Est1-RA | 2123 | CG1031-RA | 294..925 | 144..775 | 550 | 73.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:42:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 7543890..7544516 | 549..1173 | 2420 | 95.6 | Plus |
| 3R | 32079331 | 3R | 7543037..7543504 | 84..551 | 2340 | 100 | Plus |
| 3R | 32079331 | 3R | 7546931..7547128 | 775..578 | 405 | 80.3 | Minus |
| 3R | 32079331 | 3R | 7542849..7542898 | 36..85 | 250 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 19:42:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| I-element | 5371 | I-element DMIFACA 5371bp Derived from M14954 (g157749) (Rel. 44, Last updated, Version 2). | 586..635 | 631..680 | 115 | 70 | Plus |
FMO03057.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:04:53 Download gff for
FMO03057.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| alpha-Est2-RA | 106..1217 | 36..1145 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:47:32 Download gff for
FMO03057.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| alpha-Est2-RA | 105..1216 | 36..1145 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:27:00 Download gff for
FMO03057.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| alpha-Est2-RA | 105..1216 | 36..1145 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:27:00 Download gff for
FMO03057.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 7542849..7542896 | 36..83 | 100 | -> | Plus |
| 3R | 7543037..7543503 | 84..550 | 100 | -> | Plus |
| 3R | 7543892..7544469 | 551..1128 | 97 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:47:32 Download gff for
FMO03057.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 3368571..3368618 | 36..83 | 100 | -> | Plus |
| arm_3R | 3368759..3369225 | 84..550 | 100 | -> | Plus |
| arm_3R | 3369614..3370191 | 551..1128 | 97 | == | Plus |
